Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02006 ATGGAGTTCGGAGGGAACATCTTCTGCCTCGCCAACAGAGACCAAAATGGAAATACTAACGCTAACGCTTTCGCCTGGGATTCATGGCAAACAACCACTTCCAATAATAATAATAACAACACCACTTCCAGGTTGGTCAACGCTTTCAACGTTCCAGTCACTGGGGTCACCGCGCCGGAGGGCTCCGCCGCCAATCGCCCCGAGGCCGCGGGGCTGGCCAGCGCTCTCATGTTCCTCCCTCAGAACGGCGGCGTTTTGCGACACCGCCAGCAGCAGCAGCAGCAGCAGCATCCGTACGGTGGGGATGGGTCCCACGTGCACCCCGACCCGCACCTGATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAACCGTGTCTGCTGCTGCTGCTGCTGCTACTTTCGGCGGGGGGTTGGTGTTGGGGGATAAGCGTGGGAAAGGAGGGTATTCCGGCGGCGGGGCGGCGGTGAAGGGTGTTGGGTTGACGACGGCGACGGTGCCTAGGTGTCAGGTGGAAGGGTGCCAGGTGGCGCTGGTGAACGCCAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGCAGGAGGAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCACGATTCTGTGGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTATCAACAAGATGCAGTGCAGCATTGCGTGAATTGATAGCAGAAAATCGTGCAGCCATAATGGCGAGACAATTTGTATCAGACAGAGATTGGCATATTCAGCATCATGCAGTGGAAGACATGAAGGAGATTCAACCTGAGTCCAATTACTTCCCACAACACATGTTTCCACAGACACAGTGA 1026 0.5409 MEFGGNIFCLANRDQNGNTNANAFAWDSWQTTTSNNNNNNTTSRLVNAFNVPVTGVTAPEGSAANRPEAAGLASALMFLPQNGGVLRHRQQQQQQQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGSGTVSAAAAAATFGGGLVLGDKRGKGGYSGGGAAVKGVGLTTATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIQHHAVEDMKEIQPESNYFPQHMFPQTQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02006 341 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Viun5g02006 341 FunFam Squamosa promoter-binding-like protein 14 168 237 - -
Viun5g02006 341 Gene3D - 168 237 IPR036893 GO:0003677|GO:0005634
Viun5g02006 341 MobiDBLite consensus disorder prediction 240 261 - -
Viun5g02006 341 Pfam SBP domain 176 249 IPR004333 GO:0003677
Viun5g02006 341 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
Viun5g02006 341 MobiDBLite consensus disorder prediction 86 106 - -
Viun5g02006 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 275 IPR044817 GO:0003677
Viun5g02006 341 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02006 Viun-Chr5 22185764 22191259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02006 113 249 SBP-box Gene Family AT1G27370 51.825 1.14e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun5g02006 SBP 6.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02006 - - var:108327478 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g02006 5 22185764 22191259 Viun5g02006 5 22185764 22191259 ECH