Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02005 ATGTTGGATTACGAATGGAACTCATCAATGATACTCCTCGCCGGTAATGAAGTCGCCGCCGGCGAACCCGACCAAACGCGCCGCCAAATTTTCGACCACAACTTCGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACAGCCACCGCTGCTTTTTCGATTCACCACCCCTTCAACCCACCACCACAACACCAGCAGCAGCACCATCACCATCACCACCCCCAGCAGCCCTTCTTCGACCCACGCGCCTTCCATAGCGCGTCCACCGCTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTTTAGCTCCCTCCCACTATGGGCTTGGGCCTGGCTCCGGGCTTGGGTTTCTGCTCATGTCCAAGTCTGAGGATGTGACTTCGCCCATGAACTTTGAGTGCTCTGGTCACGGTCTCGGACCTGGACCCGGGCTTGGGCTCAACCTCGGTGGCCGCACATATTTTGCGGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTCCAAGACGGTGGAATCGGTTTCCACCGTGTCGTCGAATTTGCCACGCTGTCAGGCTGAAGGATGTAACACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTCGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGGCAACTCAAGAAATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATAA 855 0.552 MLDYEWNSSMILLAGNEVAAGEPDQTRRQIFDHNFAMLTDPILHGSTPTATAAFSIHHPFNPPPQHQQQHHHHHHPQQPFFDPRAFHSASTASFSPPPSVLSLNPIPPLAPSHYGLGPGSGLGFLLMSKSEDVTSPMNFECSGHGLGPGPGLGLNLGGRTYFAASNEDTLDRFYRSKTVESVSTVSSNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQEIHKSQPSLDNVT 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02005 284 Pfam SBP domain 192 265 IPR004333 GO:0003677
Viun5g02005 284 MobiDBLite consensus disorder prediction 258 284 - -
Viun5g02005 284 SUPERFAMILY SBT domain 190 269 IPR036893 GO:0003677|GO:0005634
Viun5g02005 284 MobiDBLite consensus disorder prediction 56 99 - -
Viun5g02005 284 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Viun5g02005 284 Gene3D - 187 253 IPR036893 GO:0003677|GO:0005634
Viun5g02005 284 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 172 269 IPR044817 GO:0003677
Viun5g02005 284 FunFam Squamosa promoter-binding-like protein 14 183 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02005 Viun-Chr5 22055008 22057344 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02005 1 239 SBP-box Gene Family AT1G02065 41.107 1.03e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun5g02005 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02005 - - var:108328505 456.447