Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g02004 ATGTTGGATTACGAATGGAACTCATCAATGATACTCCTCGCCGGTAATGAAGTCGCCGCCGGCGAACCCGACCAAACGCGCCGCCAAATTTTCGACCACAACTTCGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACAGCCACCGCTGCTTTTTCGATTCACCACCCCTTCAACCCACCACCACAACACCAGCAGCAGCACCATCACCATCACCACCCCCAGCAGCCCTTCTTCGACCCACGCGCCTTCCATAGCGCGTCCACCGCTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTTTAGCTCCCTCCCACTATGGGCTTGGGCCTGGCTCCGGGCTTGGGTTTCTGCTCATGTCCAAGTCTGAGGATGTGACTTCGCCCATGAACTTTGAGTGCTCTGGTCACGGTCTCGGACCTGGACCCGGGCTTGGGCTCAACCTCGGTGGCCGCACATATTTTGCGGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTCCAAGACGGTGGAATCGGTTTCCACCGTGTCGTCGAATTTGCCACGCTGTCAGGCTGAAGGATGTAACACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAGGTGTGCGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTCGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGGCAACTCAAGAAATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGGTCGTCTTCAGAATCTGGAGCTCAATCTTCGTCATCGTTGAAGGTGGCAGTGTCACCCCCAGATTATTTCCAGCAAAGACCAAAGCAAAATAGAGGCACTTCGTCAACATCATCATCCGGGTCATTGTTTTTCTCAAGTGGGACCAATTTGCATGGCTAA 1014 0.5385 MLDYEWNSSMILLAGNEVAAGEPDQTRRQIFDHNFAMLTDPILHGSTPTATAAFSIHHPFNPPPQHQQQHHHHHHPQQPFFDPRAFHSASTASFSPPPSVLSLNPIPPLAPSHYGLGPGSGLGFLLMSKSEDVTSPMNFECSGHGLGPGPGLGLNLGGRTYFAASNEDTLDRFYRSKTVESVSTVSSNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQEIHKSQPSLDNVTWSSSESGAQSSSSLKVAVSPPDYFQQRPKQNRGTSSTSSSGSLFFSSGTNLHG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g02004 337 FunFam Squamosa promoter-binding-like protein 14 183 253 - -
Viun5g02004 337 MobiDBLite consensus disorder prediction 258 337 - -
Viun5g02004 337 MobiDBLite consensus disorder prediction 271 337 - -
Viun5g02004 337 MobiDBLite consensus disorder prediction 56 99 - -
Viun5g02004 337 ProSiteProfiles Zinc finger SBP-type profile. 189 266 IPR004333 GO:0003677
Viun5g02004 337 Gene3D - 187 253 IPR036893 GO:0003677|GO:0005634
Viun5g02004 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 176 325 IPR044817 GO:0003677
Viun5g02004 337 Pfam SBP domain 192 265 IPR004333 GO:0003677
Viun5g02004 337 SUPERFAMILY SBT domain 190 269 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g02004 Viun-Chr5 22055008 22057850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g02004 1 239 SBP-box Gene Family AT1G02065 41.107 3.22e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun5g02004 SBP 6.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g02004 - - var:108328505 526.939