Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01999 ATGGGACTGGGCAAGACTTTGCAGGCTATCTCCTTTTTAAGCTATTTAAAAGTGTGCCGGTTGTCTGATGGGCCATTTTTGGTAATATGTCCTCTAAGTGTGACTGAGGGTTGGGTGCTAGAGATAGTCAAATTTACCCCTAAACTAACAGTCCTCAAATATGTTGGTGATAAAGAAAATAGGTGCAATCTACGCATGAAAATACGTGAACATGTAGCAAGACAGTCATCAACAATGAATGTCTTGTTGCCTTTTGATGTGCTATTAACTTCATATGACATTGCACTGGTGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAGAGACTTAAAAATCCATCTAGTGTTTTATTTAACATTCTCAAAGATCGCTACATAATGCCAAGACGATTGTTGATGACCGGCACACCTATTCAAAATAATCTGTCTGAACTATGGGCTTTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGACATCAGTGATCTTTCATCAGTTCATGATGCTCCAAAGGTAAAGGAGAGGCTTAATATTTTAAGAAGTATATTGGGAGCTTTTATGCTTCGACGTACCAAGTCAAAGCTTATCGAGTGTGGAAATTTAGTGCTACCACCTCTCACCGAAACAACCGTGTTAGTTCCCCTTGTCATCCTGCAGAAAAAGGTCTATATTTCAATATTGAGGAAAGAACTCCATAAGCTACTTGCACTATCATCTGGAACTTCAAATCACCAGTCACTACAGAATATTGTGATACAGCTAAGAAAGGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTAGTTCAGGCCAGTGGTAAACTACTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAACGTCTTGATGGATCAATTAGGGCTGAGGAACGTTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTACTTCAGGCTTGACTTCTGAAGCTGAACAAAATGGAGCGTTTGTGTTTATGATCTCAACACGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAGAAGACGGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCTTCTGAGCATCAATGTTACTGGTGATAACATTATCAAAAACAACGATGAAGAAACATCTGAAGTTGGAACTGGTGATTTGAAATCCATCATATTTGGGTTACATATGTTAAATCCCACTGAGATTACTGACGGAAATCATAGGGATATGAACTTACCAGAAATTAGTGTTATGGCTGACAAGGTGCTTGCCTTGCGTGATAAACAAATACGCAATACGGATGATAGGAAATTTGAGGTCAATCCAAGAAACATTTTACAAGGTGATGATGTTAAGGAAGGAGGTACTACTTTTTCTCACGATCTTGGTCTTGACGAGGCTTCATATCTTTCTTGGGTTACAAAATTTGAGGAAGTGTCTAAGTCAAGTTGCAACTCAATGATGGACTGGAGGAGCAAAAGAAACTCAGAAGAGGAAAAGAGTCTAAAACTTGAGTCTGCAAGGAAGAAGGCAGAGGAAAAGAAGCTATCCAGGTGGAAAGCTCTTGGATATCAATCATTGAGTGTAAAAGAACCTCTCACCCAAACAGACAATGACATTACATCAGCAACTGGGTCTGTTCATTTTCTGTATGGAGATTGTACAACTCCATCAAATGTTTGTTCATCTGAACCTGCTATGATTTTCAGCTGTGTTGACACCTCTGGACATTGGGGCCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACGGGCTTCTGAGCATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATGGTTGTGAAGAACAAGATATGAATGGAAATACTCCCAAGATGGTTGCTTTAGCTGTGGTTCAGTCATATAATCTAAGGCGCAAAATTCCACGCAGTGAAATCTCACTTCCCCATTTGGAAAGCTGCTTATCAAAGGCAGCATTCTCAGCAGCTCAGAATTCTGCATCAATACACATGCCACGAATTGGTTATCAAGATGGATCTGATCGTTCTGAGTGGTACACCATAGAACGACTCCTCAGAAAATATGCTTCCATTTACAACATTAATATTTATGTATATTATTATCGAAGATCAAGTTAA 2442 0.3997 MGLGKTLQAISFLSYLKVCRLSDGPFLVICPLSVTEGWVLEIVKFTPKLTVLKYVGDKENRCNLRMKIREHVARQSSTMNVLLPFDVLLTSYDIALVDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNILKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLSSVHDAPKVKERLNILRSILGAFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYISILRKELHKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSATSGLTSEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTVEEVIMRRAERKLLLSINVTGDNIIKNNDEETSEVGTGDLKSIIFGLHMLNPTEITDGNHRDMNLPEISVMADKVLALRDKQIRNTDDRKFEVNPRNILQGDDVKEGGTTFSHDLGLDEASYLSWVTKFEEVSKSSCNSMMDWRSKRNSEEEKSLKLESARKKAEEKKLSRWKALGYQSLSVKEPLTQTDNDITSATGSVHFLYGDCTTPSNVCSSEPAMIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYERASEHGDLHLGDLHLIRLDDGCEEQDMNGNTPKMVALAVVQSYNLRRKIPRSEISLPHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIYVYYYRRSS 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01999 813 FunFam Putative helicase CHR10 219 533 - -
Viun5g01999 813 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 533 IPR031053 GO:0003678|GO:0006281|GO:0006338
Viun5g01999 813 Gene3D Leucine Aminopeptidase, subunit E, domain 1 640 813 IPR043472 -
Viun5g01999 813 Coils Coil 588 608 - -
Viun5g01999 813 Gene3D - 1 218 IPR038718 -
Viun5g01999 813 Pfam Helicase conserved C-terminal domain 302 426 IPR001650 -
Viun5g01999 813 CDD Macro_Poa1p-like_SNF2 640 798 - -
Viun5g01999 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 163 IPR014001 -
Viun5g01999 813 Pfam SNF2-related domain 1 281 IPR000330 GO:0005524|GO:0140658
Viun5g01999 813 SMART ultradead3 1 171 IPR014001 -
Viun5g01999 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Viun5g01999 813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 473 IPR001650 -
Viun5g01999 813 SMART helicmild6 331 426 IPR001650 -
Viun5g01999 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 475 IPR027417 -
Viun5g01999 813 Gene3D - 219 528 IPR027417 -
Viun5g01999 813 SUPERFAMILY Macro domain-like 641 808 IPR043472 -
Viun5g01999 813 CDD SF2_C_SNF 294 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01999 Viun-Chr5 21738113 21776140 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01999 1 485 RAD5 or RAD16-like Gene Family AT1G02670 25.216 1.07e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun5g01999 SNF2_N 1.2e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01999 K20092 - gmx:100797182 1276.92