Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01998 ATGAATCTTAGCTACGAACAGAAGCTTCAAGTTGTTACAAAAATCATACTAGATGACGAGGCACGCGCCTGCGACGCGCCACCGTGCGAGGAAGAGCTCGGACTCAAGGCAACCCTTAAGCCGCACCAGGTGGAAGGGGTTTCCTGGCTAATACGGAGGTACAAACTCGGCGTCAACGTTGTCCTCGGGGATGAGATGGGACTGGGCAAGACTTTGCAGGCTATCTCCTTTTTAAGCTATTTAAAAGTGTGCCGGTTGTCTGATGGGCCATTTTTGGTAATATGTCCTCTAAGTGTGACTGAGGGTTGGGTGCTAGAGATAGTCAAATTTACCCCTAAACTAACAGTCCTCAAATATGTTGGTGATAAAGAAAATAGGTGCAATCTACGCATGAAAATACGTGAACATGTAGCAAGACAGTCATCAACAATGAATGTCTTGTTGCCTTTTGATGTGCTATTAACTTCATATGACATTGCACTGGTGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAGAGACTTAAAAATCCATCTAGTGTTTTATTTAACATTCTCAAAGATCGCTACATAATGCCAAGACGATTGTTGATGACCGGCACACCTATTCAAAATAATCTGTCTGAACTATGGGCTTTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGACATCAGTGATCTTTCATCAGTTCATGATGCTCCAAAGGTAAAGGAGAGGCTTAATATTTTAAGAAGTATATTGGGAGCTTTTATGCTTCGACGTACCAAGTCAAAGCTTATCGAGTGTGGAAATTTAGTGCTACCACCTCTCACCGAAACAACCGTGTTAGTTCCCCTTGTCATCCTGCAGAAAAAGGTCTATATTTCAATATTGAGGAAAGAACTCCATAAGCTACTTGCACTATCATCTGGAACTTCAAATCACCAGTCACTACAGAATATTGTGATACAGCTAAGAAAGGCATGCAGCCATCCTTATCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTAGTTCAGGCCAGTGGTAAACTACTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAACGTCTTGATGGATCAATTAGGGCTGAGGAACGTTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCAGCTACTTCAGGCTTGACTTCTGAAGCTGAACAAAATGGAGCGTTTGTGTTTATGATCTCAACACGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAGAAGACGGTGGAGGAAGTAATTATGCGGAGGGCAGAAAGAAAATTGCTTCTGAGCATCAATGTTACTGGTGATAACATTATCAAAAACAACGATGAAGAAACATCTGAAGTTGGAACTGGTGATTTGAAATCCATCATATTTGGGTTACATATGTTAAATCCCACTGAGATTACTGACGGAAATCATAGGGATATGAACTTACCAGAAATTAGTGTTATGGCTGACAAGGTGCTTGCCTTGCGTGATAAACAAATACGCAATACGGATGATAGGAAATTTGAGGTCAATCCAAGAAACATTTTACAAGGTGATGATGTTAAGGAAGGAGGTACTACTTTTTCTCACGATCTTGGTCTTGACGAGGCTTCATATCTTTCTTGGGTTACAAAATTTGAGGAAGTGTCTAAGTCAAGTTGCAACTCAATGATGGACTGGAGGAGCAAAAGAAACTCAGAAGAGGAAAAGAGTCTAAAACTTGAGTCTGCAAGGAAGAAGGCAGAGGAAAAGAAGCTATCCAGGTGGAAAGCTCTTGGATATCAATCATTGAGTGTAAAAGAACCTCTCACCCAAACAGACAATGACATTACATCAGCAACTGGGTCTGTTCATTTTCTGTATGGAGATTGTACAACTCCATCAAATGTTTGTTCATCTGAACCTGCTATGATTTTCAGCTGTGTTGACACCTCTGGACATTGGGGCCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACGGGCTTCTGAGCATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATGGTTGTGAAGAACAAGATATGAATGGAAATACTCCCAAGATGGTTGCTTTAGCTGTGGTTCAGTCATATAATCTAAGGCGCAAAATTCCACGCAGTGAAATCTCACTTCCCCATTTGGAAAGCTGCTTATCAAAGGCAGCATTCTCAGCAGCTCAGAATTCTGCATCAATACACATGCCACGAATTGGTTATCAAGATGGATCTGATCGTTCTGAGTGGTACACCATAGAACGACTCCTCAGAAAATATGCTTCCATTTACAACATTAATATTTATGTATATTATTATCGAAGATCAAGTTAA 2637 0.4099 MNLSYEQKLQVVTKIILDDEARACDAPPCEEELGLKATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVCRLSDGPFLVICPLSVTEGWVLEIVKFTPKLTVLKYVGDKENRCNLRMKIREHVARQSSTMNVLLPFDVLLTSYDIALVDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNILKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKDISDLSSVHDAPKVKERLNILRSILGAFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYISILRKELHKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSIRAEERFAAIRSFSSSSATSGLTSEAEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTVEEVIMRRAERKLLLSINVTGDNIIKNNDEETSEVGTGDLKSIIFGLHMLNPTEITDGNHRDMNLPEISVMADKVLALRDKQIRNTDDRKFEVNPRNILQGDDVKEGGTTFSHDLGLDEASYLSWVTKFEEVSKSSCNSMMDWRSKRNSEEEKSLKLESARKKAEEKKLSRWKALGYQSLSVKEPLTQTDNDITSATGSVHFLYGDCTTPSNVCSSEPAMIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYERASEHGDLHLGDLHLIRLDDGCEEQDMNGNTPKMVALAVVQSYNLRRKIPRSEISLPHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIYVYYYRRSS 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01998 878 CDD SF2_C_SNF 359 502 - -
Viun5g01998 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 538 IPR001650 -
Viun5g01998 878 FunFam Putative helicase CHR10 284 598 - -
Viun5g01998 878 CDD Macro_Poa1p-like_SNF2 705 863 - -
Viun5g01998 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 273 IPR027417 -
Viun5g01998 878 Pfam Helicase conserved C-terminal domain 367 491 IPR001650 -
Viun5g01998 878 Gene3D - 13 283 IPR038718 -
Viun5g01998 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 228 IPR014001 -
Viun5g01998 878 Coils Coil 653 673 - -
Viun5g01998 878 Gene3D Leucine Aminopeptidase, subunit E, domain 1 705 878 IPR043472 -
Viun5g01998 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 540 IPR027417 -
Viun5g01998 878 SMART ultradead3 35 236 IPR014001 -
Viun5g01998 878 Gene3D - 284 592 IPR027417 -
Viun5g01998 878 SUPERFAMILY Macro domain-like 706 873 IPR043472 -
Viun5g01998 878 Pfam SNF2-related domain 57 346 IPR000330 GO:0005524|GO:0140658
Viun5g01998 878 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 31 598 IPR031053 GO:0003678|GO:0006281|GO:0006338
Viun5g01998 878 SMART helicmild6 396 491 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01998 Viun-Chr5 21737936 21776140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01998 19 550 RAD5 or RAD16-like Gene Family AT1G02670 25.997 2.15e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun5g01998 SNF2_N 5.8e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01998 K20092 - gmx:100797182 1379.39