Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01994 ATGGGGAGTATGAGTGACTCAGACCGAAAACGACGTCACTTTAGCTCCTTGTCCCCAACACCTGCAGCTGCTACTGCCAAGAAACTACCCTTCTTGCCCGTTTCTGAAGATAAAAAGCTTGACATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAATTAGAAACTCAGAAGTTAGAGTATGTAGCTCTTGACAATAGGTTTGCTCAACTGAAGGAGAGGCAAAAGTCATATGATCCCACTTTATCACTGGTCAAGAAATCTTGGGAGCAGATGGTCAATGATTTGGAGTTGTGTTCTGAACATGTGAGAGAGTCAAGTGGCAAATCAAATTATAGATTTGTATCAATCATGGAAGATGGTGGTCCATCTACTGTTCAGGATGTGTTTCTTAGCCGTCTAATGCAAACTGGTGCAACTGAATGTGCAACTGCATATAACTTTGCAAACCAGACTGAAGAACATCAAGAAATTATTACTGAAAAAGCTAAAAGTATTTTAAAAAATATGGCAACAGCTGTTAATAATGTTTGGGTTCTGACGGATGGATTGCATACTGCATTACTGAAAAAGCTTCCTGTGGATGTTTTTTGTAGGCAGAAATCATCCTCTGATCTAAATGTGAAAGTTAAAAACTTGAGATTGGAATTCAGCGAACTTCATTCAAAGCACAAGTCTTTATCAAGTGAATTCCAAATTCAGCGAGATATTGATGCAAAAAATAAAGCTGAACTTGAAAGATTGAAAGGGGAACTAGCTAGCGCTGTTGCAGAGTTAGAAGAAAGCAATCACAAACTTGCAACGCTTAAGGCTGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCAGTCTTAAATGTTGGAAGTACACACATTCCTAGTGATAAGATCAGAGATAAGCAAAAGGATTTGCAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCGAAGTTCTACTCGATTAATTGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTCAAGTGTATTACTTCATCCCATGCTTACCAATTGGTTAGAGATCAGATAGAAAAGTCAAAATCAGATGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTACTTGGAGGGAGCGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTTGCAGTTTCAGATTTTAGAGTTGCTCATCTACACTCTGAGATACAGAAAAAGATAGAGGAAGGAAATATGATTGAAAATAAGCTGAAAGAACAAGCAAGAGAACCAGGAAGGAAACAGATTATTGCTGAATTCAAATCTCTGGTTTCTTCATTTCCTGAGGAAATGGGGTCTATGCAAAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGATATCCATTCATTGCGTGCAGATGTGCAGTCTGTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTTAGGGCTGCCAGTCAACTTGCTGAGATAAAGAGGCTGCATGGTGTGTTTCAAGCTTTGAGAGAAAGCGAACAGGATTTGAAGTTGATGTTAGAAATGTTTAGACGCGAGTCCATTGATTCAAGGGATGTCATGGATGCACGGGAAACAGAATATAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCACTTGATGAGCACAACTTGGAGCTTCGAGTTAAGAAAGCCAATGAAGCAGAGGCCAGATCACAGCAAAAGCTGGCTGCTGGTGAAGCTGAGATTGCGGACATGAGACAGAAATTAGAATATTCTAAAAGGAAAATGTGTGATCTGTCTGATATCTTGAAGTCTAAGAACAAACAAAATGAGAACTACTTATCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGCTGCAGCAAATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTAAGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAGAAGCGAGTAATTGAACAAGATATCCAGCAAGCAAACACATCCCTGAATTTATATGATATTAAAGCTTCAAGAATTGAAGACCAGTTGAAGTTTTGTTCGGATCAGCTTCAAAGACTGGCAGAGGATAAGCTTCAATGTTCCGTCACTTCAGAAAATACACAAAGAAGGCTGTCTGATATTAGAAGACAAACTCAACAGATTAGGGATACAGTGGTCGAATTGCAATCAAAAATTGGTAGTAATAGGGTGACGCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAACAGAGGAGGATCTGGAGGTTGCTAGGAGAAAGTTTTCACGCCTTAAAGAACAGAATGAGGGCTCTTCAATAACCGAAAAGCTTCAACAGGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGTCATGATAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGGTGGGAGTAGGCATCGGAAGTGTCCACTGTGTGGTACAAGCTTTGGGGCTAATGATGTGAAGTCTGTTTATTTGTAA 2643 0.3882 MGSMSDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYVALDNRFAQLKERQKSYDPTLSLVKKSWEQMVNDLELCSEHVRESSGKSNYRFVSIMEDGGPSTVQDVFLSRLMQTGATECATAYNFANQTEEHQEIITEKAKSILKNMATAVNNVWVLTDGLHTALLKKLPVDVFCRQKSSSDLNVKVKNLRLEFSELHSKHKSLSSEFQIQRDIDAKNKAELERLKGELASAVAELEESNHKLATLKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESTLKELLDRSSTRLIELKSLHEERIRILQQLCDLQNTLKNFKCITSSHAYQLVRDQIEKSKSDVLEYQALYEKLQVEKDNLTWREREWYIKNDLADIFQRSVAVSDFRVAHLHSEIQKKIEEGNMIENKLKEQAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADVQSVSSILDRKVKECDAFSVRAASQLAEIKRLHGVFQALRESEQDLKLMLEMFRRESIDSRDVMDARETEYRAWAHVQSLKSSLDEHNLELRVKKANEAEARSQQKLAAGEAEIADMRQKLEYSKRKMCDLSDILKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQDIQQANTSLNLYDIKASRIEDQLKFCSDQLQRLAEDKLQCSVTSENTQRRLSDIRRQTQQIRDTVVELQSKIGSNRVTRMELQVELEKERFAKKRTEEDLEVARRKFSRLKEQNEGSSITEKLQQELEEYREIIKCSICHDRAKEVVITKCYHLFCYSCIQKVGGSRHRKCPLCGTSFGANDVKSVYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01994 880 FunFam E3 ubiquitin protein ligase 809 880 - -
Viun5g01994 880 Coils Coil 298 318 - -
Viun5g01994 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Viun5g01994 880 MobiDBLite consensus disorder prediction 1 15 - -
Viun5g01994 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Viun5g01994 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Viun5g01994 880 Coils Coil 708 728 - -
Viun5g01994 880 CDD RING-HC_Bre1-like 820 878 - -
Viun5g01994 880 Coils Coil 366 386 - -
Viun5g01994 880 SMART ring_2 828 866 IPR001841 -
Viun5g01994 880 MobiDBLite consensus disorder prediction 1 21 - -
Viun5g01994 880 Coils Coil 778 805 - -
Viun5g01994 880 Coils Coil 244 281 - -
Viun5g01994 880 Coils Coil 566 586 - -
Viun5g01994 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 868 - -
Viun5g01994 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Viun5g01994 880 Coils Coil 49 76 - -
Viun5g01994 880 SUPERFAMILY RING/U-box 820 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01994 Viun-Chr5 21684619 21709137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01994 828 879 C3H Transcription Factor Family AT2G42030 37.736 5.00e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01994 K10696 - gmx:100790337 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01994 5 21684619 21709137 Viun5g01994 5 21684619 21709137 ECH