Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun5g01993 | ATGGGGAGTATGAGTGACTCAGACCGAAAACGACGTCACTTTAGCTCCTTGTCCCCAACACCTGCAGCTGCTACTGCCAAGAAACTACCCTTCTTGCCCGTTTCTGAAGATAAAAAGCTTGACATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAATTAGAAACTCAGAAGTTAGAGTATGTAGCTCTTGACAATAGGTTTGCTCAACTGAAGGAGAGGCAAAAGTCATATGATCCCACTTTATCACTGGTCAAGAAATCTTGGGAGCAGATGGTCAATGATTTGGAGTTGTGTTCTGAACATGTGAGAGAGTCAAGTGGCAAATCAAATTATAGATTTGTATCAATCATGGAAGATGGTGGTCCATCTACTGTTCAGGATGTGTTTCTTAGCCGTCTAATGCAAACTGGTGCAACTGAATGTGCAACTGCATATAACTTTGCAAACCAGACTGAAGAACATCAAGAAATTATTACTGAAAAAGCTAAAAGTATTTTAAAAAATATGGCAACAGCTGTTAATAATGTTTGGGTTCTGACGGATGGATTGCATACTGCATTACTGAAAAAGCTTCCTGTGGATGTTTTTTGTAGGCAGAAATCATCCTCTGATCTAAATGTGAAAGTTAAAAACTTGAGATTGGAATTCAGCGAACTTCATTCAAAGCACAAGTCTTTATCAAGTGAATTCCAAATTCAGCGAGATATTGATGCAAAAAATAAAGCTGAACTTGAAAGATTGAAAGGGGAACTAGCTAGCGCTGTTGCAGAGTTAGAAGAAAGCAATCACAAACTTGCAACGCTTAAGGCTGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCAGTCTTAAATGTTGGAAGTACACACATTCCTAGTGATAAGATCAGAGATAAGCAAAAGGATTTGCAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCGAAGTTCTACTCGATTAATTGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGGTTTGTTTCCCTTCGTGTGCTCCGTACTCCAGTATTTTAACTAGTATTTGTATCATAAAATGTGTGTATGTGCATTTTCTTTTTCTTTTTACTGGTATAACTTTTGGTGCTGAATGTTTGGATCAGAACACTTTGAAGAATTTCAAGTGTATTACTTCATCCCATGCTTACCAATTGGTTAGAGATCAGATAGAAAAGTCAAAATCAGATGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTACTTGGAGGGAGCGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTTGCAGTTTCAGATTTTAGAGTTGCTCATCTACACTCTGAGATACAGAAAAAGATAGAGGAAGGAAATATGATTGAAAATAAGCTGAAAGAACAAGCAAGAGAACCAGGAAGGAAACAGATTATTGCTGAATTCAAATCTCTGGTTTCTTCATTTCCTGAGGAAATGGGGTCTATGCAAAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGATATCCATTCATTGCGTGCAGATGTGCAGTCTGTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTTAGGGCTGCCAGTCAACTTGCTGAGATAAAGAGGCTGCATGGTGTGTTTCAAGCTTTGAGAGAAAGCGAACAGGATTTGAAGTTGATGTTAGAAATGTTTAGACGCGAGTCCATTGATTCAAGGGATGTCATGGATGCACGGGAAACAGAATATAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCACTTGATGAGCACAACTTGGAGCTTCGAGTTAAGAAAGCCAATGAAGCAGAGGCCAGATCACAGCAAAAGCTGGCTGCTGGTGAAGCTGAGATTGCGGACATGAGACAGAAATTAGAATATTCTAAAAGGAAAATGTGTGATCTGTCTGATATCTTGAAGTCTAAGAACAAACAAAATGAGAACTACTTATCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGCTGCAGCAAATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTAAGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAGAAGCGAGTAATTGAACAAGATATCCAGCAAGCAAACACATCCCTGAATTTATATGATATTAAAGCTTCAAGAATTGAAGACCAGTTGAAGTTTTGTTCGGATCAGCTTCAAAGACTGGCAGAGGATAAGCTTCAATGTTCCGTCACTTCAGAAAATACACAAAGAAGGCTGTCTGATATTAGAAGACAAACTCAACAGATTAGGGATACAGTGGTCGAATTGCAATCAAAAATTGGTAGTAATAGGGTGACGCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAAAGAACAGAGGAGGATCTGGAGGTTGCTAGGAGAAAGTTTTCACGCCTTAAAGAACAGAATGAGGGCTCTTCAATAACCGAAAAGCTTCAACAGGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGTCATGATAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGGTGGGAGTAGGCATCGGAAGTGTCCACTGTGTGGTACAAGCTTTGGGGCTAATGATGTGAAGTCTGTTTATTTGTAA | 2769 | 0.3861 | MGSMSDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYVALDNRFAQLKERQKSYDPTLSLVKKSWEQMVNDLELCSEHVRESSGKSNYRFVSIMEDGGPSTVQDVFLSRLMQTGATECATAYNFANQTEEHQEIITEKAKSILKNMATAVNNVWVLTDGLHTALLKKLPVDVFCRQKSSSDLNVKVKNLRLEFSELHSKHKSLSSEFQIQRDIDAKNKAELERLKGELASAVAELEESNHKLATLKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESTLKELLDRSSTRLIELKSLHEERIRILQQLCDLQVCFPSCAPYSSILTSICIIKCVYVHFLFLFTGITFGAECLDQNTLKNFKCITSSHAYQLVRDQIEKSKSDVLEYQALYEKLQVEKDNLTWREREWYIKNDLADIFQRSVAVSDFRVAHLHSEIQKKIEEGNMIENKLKEQAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADVQSVSSILDRKVKECDAFSVRAASQLAEIKRLHGVFQALRESEQDLKLMLEMFRRESIDSRDVMDARETEYRAWAHVQSLKSSLDEHNLELRVKKANEAEARSQQKLAAGEAEIADMRQKLEYSKRKMCDLSDILKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQDIQQANTSLNLYDIKASRIEDQLKFCSDQLQRLAEDKLQCSVTSENTQRRLSDIRRQTQQIRDTVVELQSKIGSNRVTRMELQVELEKERFAKKRTEEDLEVARRKFSRLKEQNEGSSITEKLQQELEEYREIIKCSICHDRAKEVVITKCYHLFCYSCIQKVGGSRHRKCPLCGTSFGANDVKSVYL | 922 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun5g01993 | 922 | Coils | Coil | 298 | 318 | - | - | |
| Viun5g01993 | 922 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Viun5g01993 | 922 | Coils | Coil | 820 | 847 | - | - | |
| Viun5g01993 | 922 | Coils | Coil | 608 | 628 | - | - | |
| Viun5g01993 | 922 | ProSitePatterns | Zinc finger RING-type signature. | 885 | 894 | IPR017907 | - | |
| Viun5g01993 | 922 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 851 | 922 | IPR013083 | - | |
| Viun5g01993 | 922 | PANTHER | RING FINGER PROTEIN-RELATED | 1 | 922 | IPR013956 | GO:0004842|GO:0010390 | |
| Viun5g01993 | 922 | ProSiteProfiles | Zinc finger RING-type profile. | 870 | 908 | IPR001841 | - | |
| Viun5g01993 | 922 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Viun5g01993 | 922 | Coils | Coil | 244 | 281 | - | - | |
| Viun5g01993 | 922 | Pfam | Zinc finger, C3HC4 type (RING finger) | 869 | 910 | - | - | |
| Viun5g01993 | 922 | Coils | Coil | 49 | 76 | - | - | |
| Viun5g01993 | 922 | SUPERFAMILY | RING/U-box | 862 | 920 | - | - | |
| Viun5g01993 | 922 | SMART | ring_2 | 870 | 908 | IPR001841 | - | |
| Viun5g01993 | 922 | Coils | Coil | 750 | 770 | - | - | |
| Viun5g01993 | 922 | Coils | Coil | 408 | 428 | - | - | |
| Viun5g01993 | 922 | CDD | RING-HC_Bre1-like | 862 | 920 | - | - | |
| Viun5g01993 | 922 | FunFam | E3 ubiquitin protein ligase | 851 | 922 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun5g01993 | Viun-Chr5 | 21684619 | 21709139 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun5g01993 | 870 | 921 | C3H Transcription Factor Family | AT2G42030 | 37.736 | 9.07e-07 | 50.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun5g01993 | K10696 | - | gmx:100790337 | 1446.41 |