Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01992 ATGGAAAGTGATGCTGGGGAAAACTTGTTCACCACATTCTCCTCCTCCTCCACCACATCCATCACCATCTCCACCACCATCTCATCATCATCATCATCATCATCTTGTTCATCTGCAACATCTTCATCCCAAACAAGTCCTCCAGATGATTCAACAGCAGCTCAGAATCAAAACACCCCAATTAGCAACAAGAAAAGACAAAGAAATGGTGATGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCAAGGAAGAAATCAAGAATATGGCTTGGAACATACCCTACTGCAGAAATGGCTGCTAGAGCACACGATGTTGCAGCTTTAGCCATCAAGGGTCACTCAGCTTACCTCAATTTCCCCAATTTAGCTCAAGATCTTCCAAGGCCCATCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAGCAACCACTTTCTTTCATCATGCCAAGCATTGTGAACCACAAAAGGATGAACAAAACCATGCAGAACAAGCCTCATTTTCAACTCAAGCTCAGCATGTTCAAGCAGAAGAAGCTTCACCTTCAACTCTATCCATGGACACTACTCAAGGGTCTTCAACTTCTCACTCTACTGCAGATGATGACACACTCTTTGACCTTCCAGATCTTTTCCCTGATGAAAACAATGGACTTTTTTTCTCTTATTCTTCTTCTTGGGGTTTATGTGCTGCTGATAGTGGATTCAGGCTTGAAGAGCAATTTTTGTGGGAGAATTACTAG 795 0.4415 MESDAGENLFTTFSSSSTTSITISTTISSSSSSSSCSSATSSSQTSPPDDSTAAQNQNTPISNKKRQRNGDDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQDLPRPITTSPKDIQAAAAKAAATTFFHHAKHCEPQKDEQNHAEQASFSTQAQHVQAEEASPSTLSMDTTQGSSTSHSTADDDTLFDLPDLFPDENNGLFFSYSSSWGLCAADSGFRLEEQFLWENY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01992 264 MobiDBLite consensus disorder prediction 65 79 - -
Viun5g01992 264 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Viun5g01992 264 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Viun5g01992 264 Pfam AP2 domain 76 127 IPR001471 GO:0003700|GO:0006355
Viun5g01992 264 MobiDBLite consensus disorder prediction 172 219 - -
Viun5g01992 264 FunFam Ethylene-responsive transcription factor 2 76 135 - -
Viun5g01992 264 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700|GO:0006355
Viun5g01992 264 CDD AP2 76 136 IPR001471 GO:0003700|GO:0006355
Viun5g01992 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 45 232 - -
Viun5g01992 264 MobiDBLite consensus disorder prediction 17 79 - -
Viun5g01992 264 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Viun5g01992 264 MobiDBLite consensus disorder prediction 179 219 - -
Viun5g01992 264 MobiDBLite consensus disorder prediction 17 64 - -
Viun5g01992 264 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Viun5g01992 264 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01992 Viun-Chr5 21601170 21602445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01992 64 260 AP2-EREBP Transcription Factor Family AT2G44940 55.072 1.11e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun5g01992 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01992 - - pvu:PHAVU_008G141000g 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01992 5 21601170 21602445 Viun5g01992 5 21601170 21602445 ECH