Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01991 ATGTCTGTTATCCAAAAACACATTCACTCTTTACAAGAACTCAACCCTGAGAAGGAGAGTTGGAATATCCTTGCAAGAGTTGTAAGGTTATGGTTTGTTGAAGATTACACAAAAGGAAAAACTCCATTTTCCGTGGAAATTGTTCTTCAAGACCAAGAGGGTGTACTAATCCATGCATCTGTTAGAGTCACATTGATATACAAATTCCAGTCTGAAATCAAAGAGGATAAGGTTTACACCATCCAATCTTTTAGTGTTTCATGTAATGGTGGTTCTTATAGAACCACAAAACACGCCTATAAGATCAACTTCCAATTTGGAACCAAGGTCAATATGGTGCAAAATGTCATTGGGATGTTTACTGGTGTTGGAACAGAGAGGGAGCTAGAGAAAGCTAGTAAGAAAACCAAAATGAATGTCATCCTTATTGAAGATGATGGTTTGCAACTGGAGTGTACTTTATTTGGTCAATATGTTGATATGTTAAATGCATTTCTAGCCTCTGGAGAGGATCAACATGTTGTCATTGCTTTGCATTATTGCAAAGTGAAGACCTTCCAAGATAAAGTTTCTATTCAAAACTGTATGAACTATACCAAGATAATTTTTAACTATGATGGTGAAGATGCAACCAAGTTGAAAAAAATAGTTAGCTTAGAAGATGATTTCATTAAGCTGCATCCTAGGAGTTCAATTGAAGGTCTAAAAGATTTTAAGCAGGAAAGTACTTTTGTAGTAAAAGCTACTATCAAACATGTGCTAGATCATGATGATTGGTGGTATACAGCATGTATCTGCAACAAAGTAGTTTATCTTGATTCCAAAATGTTTTTTTGTGAAAAGTGTAACAAGCATGTCATTAAGGTTACACCTAGGTATAAACTGAAACTTTGTGTAATTGATGCTACGGATTCTACAACTTTTGTTGTATTGGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTTTGGCATTCTTGACTTGCAAGACAAGGTTAAGTTTTTAATCTAA 1014 0.3491 MSVIQKHIHSLQELNPEKESWNILARVVRLWFVEDYTKGKTPFSVEIVLQDQEGVLIHASVRVTLIYKFQSEIKEDKVYTIQSFSVSCNGGSYRTTKHAYKINFQFGTKVNMVQNVIGMFTGVGTERELEKASKKTKMNVILIEDDGLQLECTLFGQYVDMLNAFLASGEDQHVVIALHYCKVKTFQDKVSIQNCMNYTKIIFNYDGEDATKLKKIVSLEDDFIKLHPRSSIEGLKDFKQESTFVVKATIKHVLDHDDWWYTACICNKVVYLDSKMFFCEKCNKHVIKVTPRYKLKLCVIDATDSTTFVVLDRDASAMLKKSCFGILDLQDKVKFLI 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01991 337 SUPERFAMILY Nucleic acid-binding proteins 110 221 IPR012340 -
Viun5g01991 337 CDD RPA1_DBD_A_like 26 110 - -
Viun5g01991 337 Gene3D - 111 204 IPR012340 -
Viun5g01991 337 PANTHER OS03G0429900 PROTEIN 10 325 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun5g01991 337 Gene3D - 5 110 IPR012340 -
Viun5g01991 337 Pfam Domain of unknown function DUF223 46 113 IPR003871 -
Viun5g01991 337 SUPERFAMILY Nucleic acid-binding proteins 233 328 IPR012340 -
Viun5g01991 337 CDD RPA1_DBD_C 244 331 IPR047192 -
Viun5g01991 337 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Viun5g01991 337 CDD RPA1_DBD_B_like 115 209 - -
Viun5g01991 337 Gene3D - 209 334 IPR012340 -
Viun5g01991 337 Pfam Replication factor-A C terminal domain 244 324 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01991 Viun-Chr5 21552451 21554263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01991 3 332 Core DNA Replication Machinery Family AT5G08020 22.959 7.99e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01991 - - vun:114180582 565.459