Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01990 ATGGCCACCAACAGCTCCACTCCACGCCGCCGCCCTCAGTACTTCCCCCACCACATTCCAAACCCCTCCTACGTCCGCATCCTGGATACCACCCTCCGCGACGGAGAGCAGTCGCCCGGCGCCACTATGACCTCTCAGGAGAAGCTTCGCATCGCTCGGCAGCTGGCTCAACTGGGCGTCGACGTCATTCAGCCGGGCTTTCCCTCTGCCTCTCAGGACGACTTCATGGCCGTCAAAATCATCGCTCAGGAGGTCGGCAACACCGTCGATCACGACGGACACGTTCCCGTCATTGCGGCCTTCTGCAGGTGCGTTCGGGAAGACATTGGCGTTGCATGGGAGGCTGTGAAACACGCGCAGAGGCCTCGCATTTGTACTTCCATTGCGACCAGTGACATTCACATTAAGCACAAGTTGCGAAAGTGTAAGAAGGAGGTTATTCAGATAGCTAGGGATATGGTCGCCTTTGCACGGAGTTTGGGTTGCAATGATATTCAGTTCGGTGCTGAAGATGCTACCAGATCTGAAAGAGAGTTTCTATATGAAATTCTTGGAGTAGTGATTGAAGCTGGAGCAACAACTGTGAACATAGCTGACACTGTAGGCATATTAATGCCATTCGAGTTAGGAAAACTGATAACTGATATAAAAGCCAATACACCAGGAATCGCAAATGTTATTATTTCCACTCACTGTCATAATGATCTTGGTCTTGCTACTGCTAACACCATAGAGGGTGCTCGTGCAGGTGCTAGACAATTAGAAGTAACAGTAAATGGAATTGGTGAAAGGGCTGGCAATGCATCATTAGAAGAGGTTGTGATGGCCTTGGCATGCAAGGGAGATCATGTCTTAAATGGTCTGTATACAAGAATCAATACACGAAGCATATTGGAGACAAGCAAAATGGTTGAAGAATACTCCGGTATGCATTTACAACCTCACAAGGCTCTTGTTGGAGTTAATGCATTTGTCCATGCTAGTGGCATTCATCAGGATGGGATGCTAAAACATAAAGGTACATATCAAATATTATCTCCTGAGGATATTGGGCATAAAATAACGACTGAAATTGGTATTGTGTTGGGAAAGCTGAGTGGACGCCAAGCTTTGAGAAAGCGACTAGAAGAGCTGGGTTATGAACTTAAGGATGAAGAAGTTGATAGTTTGTTTCTGCCCTTCAAAGCAATGGCCGAGAAGAAAAAGGTTGTAACTGATATCGACCTGAAAGCATTGGTATCATATAAAGTTTTCAATGCAGAAGCGATATGGAAACTTGGTGATTTACAAGTGACTTGTGGGACTTTGGGTCTTTCAACAGCAACAATAAAACTTGTTAATATTGATGGCACTACACACGTGGCTTGTTCAATTGGTACAGGAGTTGTGGATTCAACTTACAAGGCTATTAACATCATTGTGAAGGAAGCTATAAAAGTTTTGGAATATTCATTGAGTTCAGTGACAAAAGGCATTGGTATAAGTGCCACTGCACGTGTTGTAATTTGTAGAGAGAATAATCATTCATCTACTGATGCTTTCACTAGAGATGTTACTTATCCAACATTTAGTGGAACCGGAGCAGAAATGGATGTTGTTGTTGCAAGTGTTGAGGCCTATCTTGTTGCGGTGAACAAGTTGTTACGATGCAAAGAATCATTTCTTGACCCCCCTGCTGCTGCTGCTGTTTCAAACCCTCTCTTGGGTCTTGTTCCGCCCAACCCTGACCTCTGGGCTCTACGTAGGTCAGAGAGGGCCTCACTCTCTGATCCTTTGAACAGTGCAATGCAAACCCTACAGACCATGGAAGCCATGAACGTTCACGGTAGCCTTGCCTCTTCAATTGAGTCGCTCAGCAACATCAACCAGGACTTGCACCTGAAGCTGCAGCAGCAGCGCATGGCGACAATGATGTTCGGTGGGGACAGCCAGAAAGGTGAGAGCAGCGTTGCGCTGAATGGGTTTGGGAATCAGAAGTTGCTACAACCGGTTTCGTTTCAGAACCTTGCGATTTCGAAGCCAGAGAACTTGCCAGCTGGCAGTTCCATAAATGGTGGTCCAAGTCGCGTGGTGGTCTCGCGTGGTGGTGGACGGACGCGAGACGAGACGGCGGCAGGGGGCTCGCGTGGTGGTCCCGCGTGGTGGTGGCTGGACACGAGACGAGATGACGGTGGCAGGAGGCTCGCGTGGTGGTCTCGAGTGGTGGGCTCACCGGAAGTTGCGGAGAGAAGAAGAAACAGCGACGATGGCAGCGCAACAGCGGCAGTGGCAGCGGCAGCACGAGAGGCGGTGGCAGTGGCAGCACGAATTTGCAGAGAGAAATGGCAGCTGCGCGCGCGAGGAAGAAGGGGTTCTGTTTTTGAGCCCTAA 2370 0.4878 MATNSSTPRRRPQYFPHHIPNPSYVRILDTTLRDGEQSPGATMTSQEKLRIARQLAQLGVDVIQPGFPSASQDDFMAVKIIAQEVGNTVDHDGHVPVIAAFCRCVREDIGVAWEAVKHAQRPRICTSIATSDIHIKHKLRKCKKEVIQIARDMVAFARSLGCNDIQFGAEDATRSEREFLYEILGVVIEAGATTVNIADTVGILMPFELGKLITDIKANTPGIANVIISTHCHNDLGLATANTIEGARAGARQLEVTVNGIGERAGNASLEEVVMALACKGDHVLNGLYTRINTRSILETSKMVEEYSGMHLQPHKALVGVNAFVHASGIHQDGMLKHKGTYQILSPEDIGHKITTEIGIVLGKLSGRQALRKRLEELGYELKDEEVDSLFLPFKAMAEKKKVVTDIDLKALVSYKVFNAEAIWKLGDLQVTCGTLGLSTATIKLVNIDGTTHVACSIGTGVVDSTYKAINIIVKEAIKVLEYSLSSVTKGIGISATARVVICRENNHSSTDAFTRDVTYPTFSGTGAEMDVVVASVEAYLVAVNKLLRCKESFLDPPAAAAVSNPLLGLVPPNPDLWALRRSERASLSDPLNSAMQTLQTMEAMNVHGSLASSIESLSNINQDLHLKLQQQRMATMMFGGDSQKGESSVALNGFGNQKLLQPVSFQNLAISKPENLPAGSSINGGPSRVVVSRGGGRTRDETAAGGSRGGPAWWWLDTRRDDGGRRLAWWSRVVGSPEVAERRRNSDDGSATAAVAAAAREAVAVAARICREKWQLRARGRRGSVFEP 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01990 789 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 228 241 IPR002034 GO:0019752|GO:0046912
Viun5g01990 789 Gene3D - 312 427 - -
Viun5g01990 789 Gene3D - 434 549 IPR036230 -
Viun5g01990 789 FunFam 2-isopropylmalate synthase 20 310 - -
Viun5g01990 789 CDD DRE_TIM_IPMS 27 306 - -
Viun5g01990 789 FunFam 2-isopropylmalate synthase 311 426 - -
Viun5g01990 789 Pfam HMGL-like 25 304 IPR000891 GO:0003824
Viun5g01990 789 SUPERFAMILY Aldolase 21 320 - -
Viun5g01990 789 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 32 48 IPR002034 GO:0019752|GO:0046912
Viun5g01990 789 Gene3D Aldolase class I 20 310 IPR013785 -
Viun5g01990 789 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 446 547 IPR036230 -
Viun5g01990 789 MobiDBLite consensus disorder prediction 677 709 - -
Viun5g01990 789 PANTHER HOMOCITRATE SYNTHASE-RELATED 13 549 - -
Viun5g01990 789 Coils Coil 368 388 - -
Viun5g01990 789 SMART LeuA_dimer_2 403 548 IPR013709 GO:0003852|GO:0009098
Viun5g01990 789 ProSiteProfiles Pyruvate carboxyltransferase domain. 25 298 IPR000891 GO:0003824
Viun5g01990 789 Pfam LeuA allosteric (dimerisation) domain 404 548 IPR013709 GO:0003852|GO:0009098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01990 Viun-Chr5 21509897 21526151 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01990 609 671 C2C2-Dof Transcription Factor Family AT5G65590 50.794 1.49e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01990 K01649 - gmx:547778 919.457