Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01975 ATGACTTCAACACTTAACCAAGGAGATGACTCTCATGGGGGCAGTGCTTCAAAGCCAATCCACTTTTTCAGGATCATGCTCTCCCACAACCTTCAGCATGGAAAGCTGAAGCTTCCAGCAAAGTTTGTGCGCAAATATGGAAATCACTTGCCCAACACAATTTTTCTTAAGCTTCCAAACGATGCAGAATGGGAAGTAAAATTGGAGAAAAGTGATGGCAGTGTTTGGTTTCAGCAAGGTTGGAAAGAGTTTGTGGAGTACCACTCTCTAGCCCATGGGCACCTCTTGGTTTTCAAATACAATGGAACATCAAATTTCCATGTACTCATCTGTGATATGAGTTGCATGGAAATAGACTACCCTGTGAACAAAGCAAATCACAAAAGGGTCGGAATTAACAGTGAAGAAATTCAACCACCTAAGATAAAGAAAACAACTGAGAATAAGAAAAAGTGTTGTTCTAATTTGCAAGACACTGCATCTGATGAAAAAGTCAGAGACCACAAAGGTATGTTGAAGAATCTAAATGAGGTGAAGAGAAACATGGAAGGTGTTGAGAATACTCCCTTCATGGTGATAATGAAACCAAGCTTCTTTACTACTGGGTATATGTATCTGCCAAGGGTAGCAGCGAGGAGCTACGTCAAACGTCGTGAACAATGTGTTACTCTTGTTGCTGGGGACAGATCATGGAGGGTTAAATTAGTTCATTATCGAAATGATTCAGCTTACATCACTAATTTGTTAGATTTTGCAAGGGACAACAATTTGAAAGAAGGAGATGCTTGCTATTTCAAACTTATGAACATGTGTGATGAAGACATGGTGATGGAGGTTTCCTTTTGTAGCCAGAAACTCCTCTCTAAGAGGACAATAACATAA 882 0.3991 MTSTLNQGDDSHGGSASKPIHFFRIMLSHNLQHGKLKLPAKFVRKYGNHLPNTIFLKLPNDAEWEVKLEKSDGSVWFQQGWKEFVEYHSLAHGHLLVFKYNGTSNFHVLICDMSCMEIDYPVNKANHKRVGINSEEIQPPKIKKTTENKKKCCSNLQDTASDEKVRDHKGMLKNLNEVKRNMEGVENTPFMVIMKPSFFTTGYMYLPRVAARSYVKRREQCVTLVAGDRSWRVKLVHYRNDSAYITNLLDFARDNNLKEGDACYFKLMNMCDEDMVMEVSFCSQKLLSKRTIT 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01975 293 Gene3D - 169 285 IPR015300 -
Viun5g01975 293 Pfam B3 DNA binding domain 25 112 IPR003340 GO:0003677
Viun5g01975 293 Pfam B3 DNA binding domain 192 276 IPR003340 GO:0003677
Viun5g01975 293 ProSiteProfiles B3 DNA-binding domain profile. 189 285 IPR003340 GO:0003677
Viun5g01975 293 Coils Coil 168 188 - -
Viun5g01975 293 CDD B3_DNA 190 283 IPR003340 GO:0003677
Viun5g01975 293 PANTHER B3 DOMAIN-CONTAINING 14 271 - -
Viun5g01975 293 SMART B3_2 190 285 IPR003340 GO:0003677
Viun5g01975 293 SMART B3_2 22 114 IPR003340 GO:0003677
Viun5g01975 293 Gene3D - 15 115 IPR015300 -
Viun5g01975 293 CDD B3_DNA 21 112 IPR003340 GO:0003677
Viun5g01975 293 SUPERFAMILY DNA-binding pseudobarrel domain 186 269 IPR015300 -
Viun5g01975 293 SUPERFAMILY DNA-binding pseudobarrel domain 17 114 IPR015300 -
Viun5g01975 293 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01975 Viun-Chr5 21220393 21221786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01975 22 280 B3 DNA Binding Superfamily AT3G18990 25.758 1.14e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun5g01975 B3 3.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01975 - - vum:124844820 424.091