Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01967 ATGTCTGCTTTGCAAAAACAAACCCAGTCATTACAAGAATTGAACCCGGAGAAGGAAAGCTGGAATATTGTTGCAAGAGTGGTAAGATTATGGTTTGTAGAAGATTACACAAAAGGAAAATCTCCATTTTCCATGGAGATTGTTCTTCAAGACAAAGAGGGTGTCCTAATCCATGCGTCTGTTAGATGCACACTGATATACAAATTCCAATCTGAAATCAAAGAGGATAAGGTTTACTCCATTCAGTCTTTTAGTGTTTCATGTAATGGTGGTTCTTATAGAACTACAAATCATGCCTATAAGATCAACTTCCAATTTGGAACCAAGGTCAATTTGGTAGAATCTACCTTAGTTCCCAATATTAGTACTGCATACACCCCTTTTTCAACCATCCAAGCACCTGGTTTTGACATAGATTACTTAGTTAATGTCATTGGAATGTTTACTGGTGTTGGAACAGAGAGAGAGTTAGAGAAAGGTGGTAAGAAGACCAACATGAATGTCATCCTTATTGAATCTGATGGTTATCGATTGGAGTGTACTTTATTTGGTCAATATGTTGATATGTTAAATGCATTTCTTGCGTTTGGAGAGGATCAATATGCTGTCATTGCTTTACATTATTGCAAAGTGAAGATCTTCCAAGATAAAGTTTCTATTCAAAACTGTATGAACTGTATGAGGATAATTTTTAACTGTGATGGTGAAGATGCTACCAAGTTGAAGAAAATGGTGTGGGATAGTACTGAATCTCCTTCTCAACCTCTTACCCAACTTGGTCAGTCTTCAAAAGTTAGCTTAGAAGAAGATTTCATTAAGCTGCATCCTAGATGCTCAATTGAAGATCTCAAAGATTTTGAACAGGAAAGTACTTTTGTAGTGAAGGCTACTATCAAACATGTTCTAGATCATGATGATTGGTGGTACACAGCATGTATCTGCAACAAAGCTGTTTATCCTGACTCCAAAATGTTTAAACTTAGACTTCGTGTAATTGATGCTACTGATTCTACAACTTTTGTTGTATTTGATCGTGATGCAAGTGCAATGTTGAAGAAATCATGCTCTGATATTCTTGACTTACAAGACAAGAACACTGTTGCTGGTAACTTGCCTAAAGAGTTTGAAGTCCTCATTGATAAGACCTATGTGTTCAAAGTTGAGTGCAAGAATGATTATAATAGCAAATTTGAGCAATCATTTAGAGTTAAAAAAGTCTGCATGGATGAAAAAATCATTGAAAGCTTTAGTGATGTTGAACTTAAGTCTTTGGATGTATACTCTGCAAATGAAGAAGAAAGTAAACTTAAGCAGATTACAAATGAGATTGCACCTGATACCATTGCAGAGGATTTGCTGCTCAAATTCACTGAAGAATCAAATGATGTTGAGCCTGTAAGTGATCATTTGAACACTATAGAATCAAGCCCTGTTTCTACAGAGGAAGCTTTGGTCAATCAACCTTTAATTGATGTTGAAAATGATGACTTAACCCATAAAGAATCATCTCATCTGGAGAATCTTAGCTTTGATTTGGCTACCAAAGCACGTGTCCCGGCAATTAAAAGGCAGAATCAATATGCGGCTCAAGAAAACAAGAAGATCCCAGTGAAGATGTTGAAGAAGAACATCAAGATTGAAAAGTGA 1647 0.36 MSALQKQTQSLQELNPEKESWNIVARVVRLWFVEDYTKGKSPFSMEIVLQDKEGVLIHASVRCTLIYKFQSEIKEDKVYSIQSFSVSCNGGSYRTTNHAYKINFQFGTKVNLVESTLVPNISTAYTPFSTIQAPGFDIDYLVNVIGMFTGVGTERELEKGGKKTNMNVILIESDGYRLECTLFGQYVDMLNAFLAFGEDQYAVIALHYCKVKIFQDKVSIQNCMNCMRIIFNCDGEDATKLKKMVWDSTESPSQPLTQLGQSSKVSLEEDFIKLHPRCSIEDLKDFEQESTFVVKATIKHVLDHDDWWYTACICNKAVYPDSKMFKLRLRVIDATDSTTFVVFDRDASAMLKKSCSDILDLQDKNTVAGNLPKEFEVLIDKTYVFKVECKNDYNSKFEQSFRVKKVCMDEKIIESFSDVELKSLDVYSANEEESKLKQITNEIAPDTIAEDLLLKFTEESNDVEPVSDHLNTIESSPVSTEEALVNQPLIDVENDDLTHKESSHLENLSFDLATKARVPAIKRQNQYAAQENKKIPVKMLKKNIKIEK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01967 548 Gene3D - 118 252 IPR012340 -
Viun5g01967 548 CDD RPA1_DBD_A_like 23 110 - -
Viun5g01967 548 CDD RPA1_DBD_C 280 406 IPR047192 -
Viun5g01967 548 Pfam Domain of unknown function DUF223 46 131 IPR003871 -
Viun5g01967 548 SUPERFAMILY Nucleic acid-binding proteins 275 406 IPR012340 -
Viun5g01967 548 Gene3D - 6 112 IPR012340 -
Viun5g01967 548 SUPERFAMILY Nucleic acid-binding proteins 125 246 IPR012340 -
Viun5g01967 548 CDD RPA1_DBD_B_like 143 237 - -
Viun5g01967 548 Gene3D - 267 416 IPR012340 -
Viun5g01967 548 PANTHER OS03G0429900 PROTEIN 10 407 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun5g01967 548 SUPERFAMILY Nucleic acid-binding proteins 10 114 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01967 Viun-Chr5 20901620 20904145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01967 3 406 Core DNA Replication Machinery Family AT5G08020 21.461 8.85e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01967 - - vun:114180582 1038.87