Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01964 ATGAATCCAGGGACTGCCATTGCTTGCAGGACGCGTTACAGGAGGAGAAAGTTGTTTGAGGATGCTTTAATAATGAGTCGGAAGAAGAAGAAGGCACGGGAACGTGAATCAATCTCCTCCAAGGGTGAAGATGGAAGTGGGAAAATGGAACCTGTGTCACCATTTTCTGTTGGTCTTTCAATGAACAGTGAAAGAGTATCATCCGAAAGTGGATTTCAGCCTTTGGGAGGACATGAGAACGACCCAATTGAAATCAGTGATGGTGACAATGGCAGTGAGACTGAAGAGGGGTTGAGGGAGTCTGAGAACGATATATTTTGTGTTGAAGTAGAAAAGAAGAGCGAAGAAGATGAAGGGTCTTTTGTGTTGGGTGATAAAGTTGTGAACTTTGACGATGATAACTGTGGTTGTGTATCTGACAAGCCGGATGTATTGACTATTGATGATGACGAGGAGGATGATCTGCTTTCGTCTTCAACTGATAGTGAGGATAAGGAGACGAGCGATGAAGATTTTCTGGTTGCTGATGATGATGATGGCTTTGAGACTGAAGGCTCGACGACCAGTGACGAGAGTAATGGTGATGATGGTCGTGGTGGTGATGATGTGAGGGGAGTTCAGAGGAAGATATTGAAGGGTATGGTGAGAAAGATGGAGAGTGATGCTGAAAGCAGTGAGATTCGTGAAAGAAAAGGTGAAAGAAAAGGTAATGAACAGGTAGATGTGGAGGAACTATGGAGGATGGCTGATTGTACTAGTGCGACCTCTAGTAAATCTGAGATTTATAAGAAGGAAGGACAACATGTAGCACATAAAGATGAAGAAAAGAGAGTGCAAAGTGTCATTGCAGATTCTGAAGTTTTTGGTGTTCACGTGAAAAATTCAGGTTGTTCTATGTCTTCTGAAGCACTGGAGCATATGAAGAAAAGTGATAGTGCGACATTGCAGAAACAGATAGGAGATCCAGCTGTGGTCGAGAAGAGTGGGAGAAATAAAAATATCAATGTTGACTTGGTAGATATTGATGATATTAAAAGAAAAGGGAATCAACAAAACAAAGGAACAGGTTTGAGAAGTGTTTCTTTTCGTCCCAAAAACCAAGCGAAGATAGGAGATTCGGCTAAAATTGTAATGGAAAAGGACAAGGAAGGGGAACCAAAATATTGGTTTCATAGCAATAACCGTAAGAAGGACGGGGACGGAGCAGTGGATGATGAAACTGGTGACAAAGAGTTGTATGAAGTAACAAGGATGCCATCCACGTTGAAAAACAAATGTTATCAAATTTTTACTGAATGTTTTATGGGCAAGAATGATTCTGTTAAGGATAATTCATATAAGTTGGATGAAAAGGATGATGTTGTTGCTGAGGGTGAGACTCAGGCATTAGTTTCCAGGGAGCCAACCCCTTTGAATTGTTCTTTTATGAACGAAGAAGAACCTGTTGAAAAATCAGAGGAAGATGAGTTAGATATGTTGTGGGCTGAAATGGACATGTTGCTTCGAGCTGAAGAAATTGGGACCCAGGTTAATAATATGGGGACAAATGAAGCAACAGAAAACGGAGAAAGTTCAGCCCCGAAGTGCAAGCATGACACCATCTTTAATGAGCAGATTGGGATATATTGTAGATGGTGTGGTTGGACCGTCACTGAAATCAAATATATCACACCACCATTTGTGGATTCTGAAAGATATGGTGGTAGAATGGCGTCATCTAGTGAAGGGAAAACCTCACTATTGGATGGGGCTATGTTGAATGAGTCTGGTGATGATGACTCGGAGGTCATTTGGTCTCAGAAAGAAGGCACAGTTTGGGACCTTATTCCTGACATCAAACAGAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGAGAAACTTGGCAGGAACTATTGACCTTGCCAAATTGAAGAGTGTTGACCCTTGCAATGAAGGAGGCTGCATTATTTCTCATGCTCCTGGAACAGGAAAGACTAGGTTGACCATGGTGTTTCTTCAGTCATATTTGCAATTGTTTCCAAAGTGTCTACCTGTTATCATTGCTCCTTCCAGCATATTGCTTACCTGGGAAGACGAGCTGAGAAAGTGGAAACTAGGAATTCCATTCCATAACTTGAACAGTGCTGAATTATCAGGGAACGAACAACTCATCAGTGAAGTTGATTGGTATGGTAACCAGAGGCAGAATAAGGATGCCATAAGGATGGTGAAATTGTGTTCATGGTACAAAGAAAAGAGCATTCTACTAATCAGCTACAATTTGTATGAGAAGCTAGCAGGGGCCACTTCTGTAGGTGGTGGGGGAAAAGATAAGAATAATAAAAAGTTCGGGAAAAAGAAACGTGCAAAGACAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTACTTGACGAAGGACACACTCCTCGGAACCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGAGAATTCTTCTCTCAGGGACTCCTTTCCAGAACAACTTTTTGGAACTTTACAATATTTTGTGCTTGATGAAACCATCCTTTCCTGACAGCATCCCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAATGCAAGGAGGAAAAGCTTCGAAAGAAATGAATTGGGAACATGTTTCTTCTGGAAATCCAGCTGATGTAAAAATAAACCAGCTAAAATTGCTGATGAACCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTGAGAAGAACCTTCCTGGGTTGAGAGAATGTGTGTTGGTTCTGAAGCCAGACATTTTGCAGCAAGAAACTCTAGAGAGCATTGAATGCTCTCAAAACGTACTAAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAGCTGCTCCTTGTCAGAAAAAGAAGAATCTATTATTGACAAGGATAGGTTGGAAAAAATTAGACTGAACCCTTATGCAGGGGTGAAAACCAAGTTTCTGATCGAGTTTATAAGACTATGCGATGCAGTTAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACTTTAGACTTAATCAAGGAGCAGCTGGAGTCTGCATTGAATTGGACTGTGGGGATGGAAGTGTTATATATGTATGGCAGGCTTGACCAAAAGCAGAAACAGTCCCTCATTTATAGTTTCAATGATGCAAATAGCCGAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCCTCTGAAGGCATTAACTTAGTTGGAGCTTCAAGGGTGGTGCTTCTTGATGTTGTTTGGAATCCCTCGGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAGAAGAAAGTTGTTTTTACTTATCATCTTCTTGCCCAGGACACCCCTGAATGCACCAAATATTGCAAACAAGCTGAAAAGAACCGATTATCTGAACTGGTTTTCTCAAATAAAAATGCTGAAAGCGATAAGCTCAAGAGTAGTGGAGTAATGCTTGAGGATTTTGAGGATAGAGTTCTTGATGTCATGGTTCAGCATGAAAAACTCAAGGATATGATTGGTGAATGTCTAATTCAACCTAGGAAGAGAGATTTGGAGATCTTGGGTCCCTGA 3627 0.4114 MNPGTAIACRTRYRRRKLFEDALIMSRKKKKARERESISSKGEDGSGKMEPVSPFSVGLSMNSERVSSESGFQPLGGHENDPIEISDGDNGSETEEGLRESENDIFCVEVEKKSEEDEGSFVLGDKVVNFDDDNCGCVSDKPDVLTIDDDEEDDLLSSSTDSEDKETSDEDFLVADDDDGFETEGSTTSDESNGDDGRGGDDVRGVQRKILKGMVRKMESDAESSEIRERKGERKGNEQVDVEELWRMADCTSATSSKSEIYKKEGQHVAHKDEEKRVQSVIADSEVFGVHVKNSGCSMSSEALEHMKKSDSATLQKQIGDPAVVEKSGRNKNINVDLVDIDDIKRKGNQQNKGTGLRSVSFRPKNQAKIGDSAKIVMEKDKEGEPKYWFHSNNRKKDGDGAVDDETGDKELYEVTRMPSTLKNKCYQIFTECFMGKNDSVKDNSYKLDEKDDVVAEGETQALVSREPTPLNCSFMNEEEPVEKSEEDELDMLWAEMDMLLRAEEIGTQVNNMGTNEATENGESSAPKCKHDTIFNEQIGIYCRWCGWTVTEIKYITPPFVDSERYGGRMASSSEGKTSLLDGAMLNESGDDDSEVIWSQKEGTVWDLIPDIKQSLYPHQQEGFEFIWRNLAGTIDLAKLKSVDPCNEGGCIISHAPGTGKTRLTMVFLQSYLQLFPKCLPVIIAPSSILLTWEDELRKWKLGIPFHNLNSAELSGNEQLISEVDWYGNQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATSVGGGGKDKNNKKFGKKKRAKTREYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLMQGGKASKEMNWEHVSSGNPADVKINQLKLLMNPFVHVHKGSILEKNLPGLRECVLVLKPDILQQETLESIECSQNVLNFEHKLALVSVHPSLFLSCSLSEKEESIIDKDRLEKIRLNPYAGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLDLIKEQLESALNWTVGMEVLYMYGRLDQKQKQSLIYSFNDANSRAKVLLASIKASSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVFTYHLLAQDTPECTKYCKQAEKNRLSELVFSNKNAESDKLKSSGVMLEDFEDRVLDVMVQHEKLKDMIGECLIQPRKRDLEILGP 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01964 1208 MobiDBLite consensus disorder prediction 56 74 - -
Viun5g01964 1208 MobiDBLite consensus disorder prediction 145 185 - -
Viun5g01964 1208 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 120 1202 IPR044567 GO:0080188
Viun5g01964 1208 MobiDBLite consensus disorder prediction 25 43 - -
Viun5g01964 1208 CDD SF2_C_SNF 975 1129 - -
Viun5g01964 1208 MobiDBLite consensus disorder prediction 92 122 - -
Viun5g01964 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 878 IPR027417 -
Viun5g01964 1208 Gene3D - 591 900 IPR038718 -
Viun5g01964 1208 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 859 IPR014001 -
Viun5g01964 1208 SMART helicmild6 1033 1118 IPR001650 -
Viun5g01964 1208 Gene3D - 925 1196 IPR027417 -
Viun5g01964 1208 MobiDBLite consensus disorder prediction 194 241 - -
Viun5g01964 1208 Pfam Helicase conserved C-terminal domain 1003 1118 IPR001650 -
Viun5g01964 1208 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1006 1159 IPR001650 -
Viun5g01964 1208 MobiDBLite consensus disorder prediction 25 241 - -
Viun5g01964 1208 Pfam SNF2-related domain 625 945 IPR000330 GO:0005524|GO:0140658
Viun5g01964 1208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 804 1164 IPR027417 -
Viun5g01964 1208 SMART ultradead3 612 867 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01964 Viun-Chr5 20579489 20583964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01964 1016 1164 RAD5 or RAD16-like Gene Family AT5G43530 37.584 2.14e-20 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun5g01964 SNF2_N 6.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01964 K10875 - gmx:100812737 1408.66