Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01947 ATGTATAAGGGTATTCCTATTGCTCTCAGGACTCGAAGCAATAAGGTGGTGGTCGGGGGTGGTTTGGCAATGGGTCCGAAAAGAAGAAAGGTGGATGAAGATGACGACGAAGACGATGATGAAGTAATTTGTTTGGGAGAAAATTTGGACGGCCTTGCAAGAGAGAAACTTGCGTCTGGGTCTGGGGCTTCATGTTCTTCACCGGGTTTCATGTATTTGGGAGAGACTGAGGATGATCCTGATCCTGATCCTGAAAAGGTGGTTAACCTCGAAGACCATGATGCGGTTGAAGCGGGGTTTGAGTGTTGCGAAACCAAGGCTTTTCAGGTTAAGGAGGAAGAGAGGGATGAGGAGGGTGAAGGGTGTTCTGTAGCAGCTGTGAGACCTGAAAAAGTTGAAAGCTTTGATGATGAAGAATACGGTACTAAACCTGAAAGGCCGGTTGTTTTGTTGCCCCATTTAGAGAGGAGTGGACGTAGTAGCTCTGATGAGGGATACGATTCATTTTGGTCTTCAACGGAGAGTGAGGATGTTGAGACCAGTGATGATGATTTTAAGGTTGATGAGGACGATGATGATGATGATGATGGTGAGAGTGAAGACTCAAGCAGTGAGGAGAGTGATTCTTCTGAAGAAGATGAAAGGAGGGGATACACGAAGATGGTTAAGGAAAGAGTAAGAAAAGTGGTGAGTGAATCTGAGAGCAGTAGAGTTTGGAGAAGGAAAGTTGAAAGGAAGAGTAAGCACGCAGAGGAGGAGGCGGAGAAATGGAATGGTGGAGATTGTGCTAGCGTTGCATCTAGTAAATCAGAGATTAATAAGGAGGGAACAAAAAGGGCAGAAGAGAGGAAACAAGGAGCAAACAGAGTAGGGAATGTCAATAATGCTGATCCTGAAGTTTTTAGTGATCAGGGGCAAAGTTCAGGTCTGTCTGTGTCTTCTGAAGATGATGCATCAGAGGATAAGGAGAAACGAGTGGGGAGTCATCAAAAGGTGTTTTTTCAGAAGGAGACAAATTCTACTGTGAACAAGTGTGGGAAAAATAATAAGGTGAAGGCCAATGCTAAAGAAACTGGACATAGAGATGAGCTGCATGAAATGCTGAGGATGTCATCGACAACAAAGAACCAGTGTTTCGAATTCTTCACTGAATGCTTTAGGGGCAAGCGTGATTCTGCTAAAGATGTTTCAAGAGATTTGGATAAAAAAGTTGATGGGGGTCAGACTCAGCCATTTGGTTCAAGCGACACAATTTCTTTAAACTGGAACTCCATGATGAAAGCAAAGCCTGTCGAGAAATCTGAGTCTGAGAAAGAGTTGGATATGTTATGGGAAGAAATGGAGATGTTGCTTCAAGCTGAAAAAATCGGAGTCCAGGATAATACAGGAACAGATGAACCAGGAGAAAATGAAGAAAATTCAGTCCCGCGTTGCAAACATGACACCATTTTTAATGAGCAGATAGGGATATATTGCAGATGGTGTGGTTGGATTGAAACTGAAATAAAATATATAACACCACCGTTTATAGATTCTGAGAGATGTGGCAGAAGGGCGTCGCCTGGTGGAGGGAACAACTCGCGTTTTGATGGCGTTCTGTTCAGTGAGTCTGGTGAAAATTCAGAAGCAGTTAGGTCTCACAATCATGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTGTTTCCTCACCAGCAAGAGGGGTTTGAGTTTATTTGGGCGAATTTGGCAGGAACCATTGAACTTTCCAAGTTGAAGATGGTTGATCCTCAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTTTGCAGACATATTTGCAAGTGTTTCCTAAGTGTTTACCCATTATCATTGCTCCAGCCAACATATTACTCACTTGGGAAGATGAGCTGAGGAAGTGGAACATAGGAATTCCATTCCACAATCTGAACAATGCTGAATTATCAGGGAAGGAACATGCCATTAGGGAAGTTGATTTGTTATTCAACCAACAGCAGAAGAAGGATGTCATAAGAATGGTGAAGTTGTGTTCTTGGTACAAGGAGAAGAGCATTCTGTTAATCAGCTACAATCTATATGAAAAGCTAGCTGGTGGAAAGTCTGAAGGAGATGGGGAGAAAGAGAAGAAAAACAGAAAGATTGGAAAAGAGAAGAAACGTGCAAGATCTAGGGAGTATGTTGAAACTGAATTGGGAAATGTTCTGCGAGACTATCCTGGTTTATTAGTTCTTGATGAAGGTCACACACCAAGGAACAAGCGAAGCTGTATTTGGAAGGTTCTGTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTCGAACTCTACAATATTTTGTGCTTAATGAAACCATCTTTTCCTGACAGCATACCGCAGGAACTCAAAAAGTTCTTGAAAAACAAACTGATACAGGAAACGAAAGCTTCAAAAGATGAGAGTTGGGAACCCATTTCTGCAGGAAATCAAGCAGATGAAAAGATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGTTTAAGAGACTGTGTGCTGGTTTTGAAGCCAGAATGCTTGCAGAAAAACATTCTGGAGAGCATTGACTGTTCTCAAAATGCACTTAACTTTGAGCACAAGTTGGCCTTGGTCTCTGTCCATCCCTCGCTCTTCCTGAACTGCGCTCTGTCAAAGAAAGAAGAATCTGTTGTTGATTCGGAGCTGTTGAACAGGATTAGATTGGACCCTTATGAAGGGGTGAAAACCAAATTTCTGATTGAGTTTTTGAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTGATCAGGGACCAGCTGGAGTCAGCCTTCAACTGGAGTGTGGGAACGGATGTGTTGTATATGCATGGAAAGCTTGATCAGAAGCAAAAGCAATTTCTGATTCACAATTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTAGCTTCTATAAAAGCATCTTCTGAAGGAATTAACCTTGTTGGAGCTTCAAGGGTGGTGCTTGTTGATGTTGTTTGGAATCCCTCGGTGGAAAGGCAAGCTATTTGTAGAGCATATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAATATGGTAAACAGTCAGAGAAGGATCGCTTATCTGAACTGGTATTCTCAAGTAGGAATGTTGAGAATGATAAGCTTGAGAATGTTGGAGTGAAGTTTGAGGATAAAGTTCTTGATCTCATGGTTCAGCATAACAGTCTCAAGGACATATTTGGTGAATGTCTGGTTCAACCAAAGGACAGAGATTTGGAAACTTTGGGCCCTTAA 3462 0.4258 MYKGIPIALRTRSNKVVVGGGLAMGPKRRKVDEDDDEDDDEVICLGENLDGLAREKLASGSGASCSSPGFMYLGETEDDPDPDPEKVVNLEDHDAVEAGFECCETKAFQVKEEERDEEGEGCSVAAVRPEKVESFDDEEYGTKPERPVVLLPHLERSGRSSSDEGYDSFWSSTESEDVETSDDDFKVDEDDDDDDDGESEDSSSEESDSSEEDERRGYTKMVKERVRKVVSESESSRVWRRKVERKSKHAEEEAEKWNGGDCASVASSKSEINKEGTKRAEERKQGANRVGNVNNADPEVFSDQGQSSGLSVSSEDDASEDKEKRVGSHQKVFFQKETNSTVNKCGKNNKVKANAKETGHRDELHEMLRMSSTTKNQCFEFFTECFRGKRDSAKDVSRDLDKKVDGGQTQPFGSSDTISLNWNSMMKAKPVEKSESEKELDMLWEEMEMLLQAEKIGVQDNTGTDEPGENEENSVPRCKHDTIFNEQIGIYCRWCGWIETEIKYITPPFIDSERCGRRASPGGGNNSRFDGVLFSESGENSEAVRSHNHGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTIELSKLKMVDPQSEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEHAIREVDLLFNQQQKKDVIRMVKLCSWYKEKSILLISYNLYEKLAGGKSEGDGEKEKKNRKIGKEKKRARSREYVETELGNVLRDYPGLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFLKNKLIQETKASKDESWEPISAGNQADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPECLQKNILESIDCSQNALNFEHKLALVSVHPSLFLNCALSKKEESVVDSELLNRIRLDPYEGVKTKFLIEFLRLCDAVNEKVLVFSQFIDTLCLIRDQLESAFNWSVGTDVLYMHGKLDQKQKQFLIHNFNDANSQAKVLLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYGKQSEKDRLSELVFSSRNVENDKLENVGVKFEDKVLDLMVQHNSLKDIFGECLVQPKDRDLETLGP 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01947 1153 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 86 1147 IPR044567 GO:0080188
Viun5g01947 1153 Gene3D - 876 1138 IPR027417 -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 58 85 - -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 176 208 - -
Viun5g01947 1153 Pfam SNF2-related domain 573 893 IPR000330 GO:0005524|GO:0140658
Viun5g01947 1153 MobiDBLite consensus disorder prediction 315 331 - -
Viun5g01947 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 752 1110 IPR027417 -
Viun5g01947 1153 CDD SF2_C_SNF 923 1077 - -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 712 732 - -
Viun5g01947 1153 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 589 807 IPR014001 -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 111 335 - -
Viun5g01947 1153 Gene3D - 535 860 IPR038718 -
Viun5g01947 1153 Pfam Helicase conserved C-terminal domain 950 1066 IPR001650 -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 288 314 - -
Viun5g01947 1153 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 954 1122 IPR001650 -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 209 258 - -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 272 286 - -
Viun5g01947 1153 MobiDBLite consensus disorder prediction 111 162 - -
Viun5g01947 1153 SMART ultradead3 559 815 IPR014001 -
Viun5g01947 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 828 IPR027417 -
Viun5g01947 1153 SMART helicmild6 981 1066 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01947 Viun-Chr5 19866097 19870396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01947 964 1118 RAD5 or RAD16-like Gene Family AT5G43530 36.129 7.24e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun5g01947 SNF2_N 1.4e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01947 K10875 - gmx:100806733 1271.53