Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01938 ATGGGAAGACACTCTTGTTGCTACGAACAGAAGTTACGAAAAGGCCTTTGGTCTCCAGAGGAAGATGAGAAGATTCTGGATTACATCACCAAACATGGTCATGGATGTTGGAGCTTAGTCCCCAAACTTGCTGGTCTGCAGAGGTGTGGGAAGAGTTGTAGGTTGAGGTGGATAAATTACCTCAGGCCTGGTTTGAAGAGAGCAGCATTCTCACAAGAGAAGGAGAACATGATCATTGAACTCCATGCAGTTCTTGGAAACAGGTAG 267 0.4569 MGRHSCCYEQKLRKGLWSPEEDEKILDYITKHGHGCWSLVPKLAGLQRCGKSCRLRWINYLRPGLKRAAFSQEKENMIIELHAVLGNR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01938 88 Gene3D - 11 67 - -
Viun5g01938 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun5g01938 88 SUPERFAMILY Homeodomain-like 16 88 IPR009057 -
Viun5g01938 88 FunFam Myb transcription factor 11 67 - -
Viun5g01938 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Viun5g01938 88 CDD SANT 17 61 IPR001005 -
Viun5g01938 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun5g01938 88 PANTHER MYB DOMAIN PROTEIN 55 1 88 - -
Viun5g01938 88 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01938 Viun-Chr5 19836806 19837186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01938 1 88 MYB Transcription Factor Family AT1G09540 86.364 9.88e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun5g01938 Myb_DNA-binding 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01938 K09422 - gmx:778072 179.104