Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01934 ATGGTCACAGGAAACATTGACAAGGCTTTGGAGGTAGGTTCCAAATTGGCGATAAGCCGGATAAAATTCAACTTATTCAAACTAAACGCGTTGAAAAACATAGCGACAACCCAACAACAATTAAATGTCATTATCAAATACCAGATAATCTCCTCAATATCAACTTCAATACCAAGTTCAAATATTCATGTTCAAATACCTTTTTTCTCTCACAAACCATTCACCAAAATCTCAGCCATGAAGCTGAATCGCCTATGCATCGTTTTACCACCAAATTCTGGTGAAATGGTGGTGCCACTTGAAAAGGGACTGCAACAAGAACCCTTCCAAACACCAAAGAAACAAGTTGTTGAGGCCAAACACCCTCACAGGGCATGTGGGGGGCAAGTTCTTGCTTCTCTTCGAGATGTTTTGGGCAAGTTTTATGACTCAGGGTGGTGGAGAATTTGCCAAAAGGGAGAGCACAAAGAGAAGCACGACTGTGGTGTGTTGTTTCACGATATGGATGGTGTGCAAGTTTCTGTTAACATTGGGAGGGACAACCCCAGAATTTTCAGCTATGCAGAGCTGTTCATAGGGTCTAATGGTTTCAGTGAAGACCAAGTTTTGGGGAGTGGAGGGTTTGGCAGAGTGTACAAGGCCGTTTTGCCGAGTGATGGAACCGTGGTTGCTGTGAAGTGCTGTTTGGCAGGGAAAGGGAAGCAGTTTGAGAAAAGTTTTGCAGCAGAGTTAACAGCCGTCGCTGATCTTCGCCACAAGAATCTTGTGAGGCTGAGGGGTTGGTGTGTCAATGAAGATCAGTTGCATCTTGTTTATGACTACATGCCAAACCGAAGCCTTGACCGTGTTCTGTTTCGCAGGCATGAGAACTTGAAGGGCAAGCCTCTTCAATGGGGACAAAGAGTGAAGATTGTGAAAGGTTTGGCAGCTGCATTGTATTATCTCCATGAGCAACTAGAGACTCAGATCATTCATAGGGATGTTAAGACCAGCAACGTGATGCTTGATTCCCATTACAATGCTCGGTTGGGTGACTTTGGCATGGCAAGGTGGCTAGAGCATGAGCTTGAGTATGAGTATAAGTATAAGAACAGGAAAACAACATCAATCAGAAGTGACCATTTCAGATTGGGAGAAACATCAAGAGTAGGGGGCACAATTGGGTACCTTCCTCCTGAAAGCTTGCAGAAACCAAGCAATGCTACCTCCAAATTTGATGTCTTCAGTTTTGGGATTGTTGTGCTTGAGGTGGCTTCTGGAAGAAGAGCAATTGATCTCACACAGACAGATGAACAAATGATTCTGCTTGACTGGGTTAGAAGGCTTTCTGATGAAGGAAAGCTTCTGGAAGCAGCTGATACAAGGCTACCAGATGGATCCTTCATCCTCTCAGAGATGCAGCATTTCATTCACACAGGCCTTCTCTGCACACTCCATGACCCACAATTGAGGCCAAGCATGAAATGGGTAGTGGAAGCTCTTTCTGATTTTTCTTTTAAACTACCACCACTCCCTTCTTTTCTCTCCCACCCTTTATACATCTCTTTGTCTTCCCCATCTGATACTAGTCACAGTCCAAGCAGCACAAGCGGCACTAGCTCCACCACAGATAATGCAAGCATAACCACCAACAATACCTCAAACTATGTCACAGCAGCAGGTCAAACTGTGTATGTAACCGCTGAGTACAAAAACAGTGAAATCGTCTCTTCTAAGAGCATGCACCACCAGCGACCATTTCCTGTGGTAGAAACTCCAAGAGAAATATCATACAAGGAGATTGTTTCTGCTACAGATAACTTCTCTGATTCAAGAAGGGTCGCTGAGCTAGACTTTGGAACTGCTTACCATGGCATCCTTGATGACAAATGCCATGTTTTGGTGAAACGCCTTGGAATGAAGACATGTCCTGCACTGCGTGATAGATTCTCCAACGAACTCCGGAATCTGGGAAGGCTTCGCCACAGGAATTTGGTTCAACTTCGTGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTATTTATGATTACTCGGCAAGTAGAATTCTCAGCCAACTTCTTATGCATCATAACAATGGAACTCGAAGTGGAGCTTCTTTCCTCCAATGGCATCACAGGTACAACATAGTGAAAGCACTGGCCTCTGCAGTACTCTATCTACACGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACTTCTTCTGCTGTCATTCTTGAGCAAGATATGAATCCAAGACTCAGCTCTTTCGCTCTAGCAGAATTTTTGTCAAGGAATGAGCATGGTCATCATGTGGTTGCTGACACTAGAAAATCGGTTCGTGGGATTTTCGGCTACATGTCACCAGAATACGTGGAATCAGGTGAAGCAACCACCGAAGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTGAGTGGACAGATGGCAGTGGATTTCAGGCAACCAGAGGTACTTTTGGTGAAGAAGGTTCATGAGTTTGAGATGAGAAAAAGACCATTGAAGGAATTAGCTGACATTAGACTCAATGGAGAATACAATGACCAAGAATTGATGAGATTAGTAAGATTAGGAATTGCTTGCACAAGTTGCAACCCGCAGTTAAGACCAAGCATGAGACAAATAGTAAGCATCCTTGATGGCAATGACAAATTACTTGTCCAGAATAGCAAGGAGAGCAGTGAAGAATGGAGACAGATAAATTACTGTTCTTTGTCAATGGTTAAGAGAATCCAAGCTCTAGGAATACAGTAA 2763 0.4379 MVTGNIDKALEVGSKLAISRIKFNLFKLNALKNIATTQQQLNVIIKYQIISSISTSIPSSNIHVQIPFFSHKPFTKISAMKLNRLCIVLPPNSGEMVVPLEKGLQQEPFQTPKKQVVEAKHPHRACGGQVLASLRDVLGKFYDSGWWRICQKGEHKEKHDCGVLFHDMDGVQVSVNIGRDNPRIFSYAELFIGSNGFSEDQVLGSGGFGRVYKAVLPSDGTVVAVKCCLAGKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVNEDQLHLVYDYMPNRSLDRVLFRRHENLKGKPLQWGQRVKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEYEYKYKNRKTTSIRSDHFRLGETSRVGGTIGYLPPESLQKPSNATSKFDVFSFGIVVLEVASGRRAIDLTQTDEQMILLDWVRRLSDEGKLLEAADTRLPDGSFILSEMQHFIHTGLLCTLHDPQLRPSMKWVVEALSDFSFKLPPLPSFLSHPLYISLSSPSDTSHSPSSTSGTSSTTDNASITTNNTSNYVTAAGQTVYVTAEYKNSEIVSSKSMHHQRPFPVVETPREISYKEIVSATDNFSDSRRVAELDFGTAYHGILDDKCHVLVKRLGMKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVIYDYSASRILSQLLMHHNNGTRSGASFLQWHHRYNIVKALASAVLYLHEEWDEQVIHRNITSSAVILEQDMNPRLSSFALAEFLSRNEHGHHVVADTRKSVRGIFGYMSPEYVESGEATTEADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLNGEYNDQELMRLVRLGIACTSCNPQLRPSMRQIVSILDGNDKLLVQNSKESSEEWRQINYCSLSMVKRIQALGIQ 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01934 920 PANTHER - 37 496 - -
Viun5g01934 920 CDD STKc_IRAK 612 884 - -
Viun5g01934 920 Gene3D Phosphorylase Kinase; domain 1 560 677 - -
Viun5g01934 920 FunFam Receptor like protein kinase S.2 679 905 - -
Viun5g01934 920 FunFam Receptor like protein kinase S.2 561 677 - -
Viun5g01934 920 ProSitePatterns Protein kinases ATP-binding region signature. 203 232 IPR017441 GO:0005524
Viun5g01934 920 Pfam Protein tyrosine and serine/threonine kinase 607 882 IPR001245 GO:0004672|GO:0006468
Viun5g01934 920 Pfam Protein kinase domain 198 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01934 920 ProSiteProfiles Protein kinase domain profile. 197 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01934 920 Gene3D Transferase(Phosphotransferase) domain 1 682 908 - -
Viun5g01934 920 Gene3D Phosphorylase Kinase; domain 1 169 274 - -
Viun5g01934 920 FunFam Receptor like protein kinase S.2 171 274 - -
Viun5g01934 920 ProSiteProfiles Protein kinase domain profile. 601 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01934 920 SUPERFAMILY Protein kinase-like (PK-like) 574 882 IPR011009 -
Viun5g01934 920 Gene3D Transferase(Phosphotransferase) domain 1 275 499 - -
Viun5g01934 920 SMART serkin_6 197 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01934 920 MobiDBLite consensus disorder prediction 519 544 - -
Viun5g01934 920 SUPERFAMILY Protein kinase-like (PK-like) 181 534 IPR011009 -
Viun5g01934 920 FunFam Receptor like protein kinase S.2 275 500 - -
Viun5g01934 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01934 Viun-Chr5 19695255 19699066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01934 587 883 Receptor kinase-like Gene Family AT5G55830 36.545 1.43e-53 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun5g01934 Pkinase 7.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01934 - - vun:114184452 1759.58