Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun5g01880 | ATGGTTAGCCAGGAGAGAAAGAAGAAGATAAAAAACGGGTCTTATGGGTTTGGGTCCATTTTCATGCATGCCGATCGCAAAGATTTGCTTTTTATGATTTTAGGTACCTTTGGGTCTGTTGGGGAAGGCTTTGCCACCCCTCTAGTCTTGTTTATCAGCAGCCGCATGATGAATAACATTGGGAGTTCATCCAACATGCAAGGGAACACCTTCATCCATAACATCGACAAGAATGCAGTGGCGTGGTTATATTTAGCTCTTGGCTCTTTTGCCGTTTGCTTCATGGAGGGTTACTGTTGGACAAGAACAAGCGAAAGACAGGCAGCGAGAATGAGATTCAGGTATCTGAAAGCAGTGCTTCGACAAGATATTGCGTACTTTGATATGCATGTCACAAGCACGTCAGAGATCATCACCAGCGTCTCCAACGACAGCCTCGTAATCCAAGATGTTCTCAGTGAAAAGGTTCCGAATTTCTTGATGAACATTTCGTTGTTCGTTGGGAGCTACATAGCGGCGTTTGCAATGTTGTGGAGGCTGGCCATAGTGGGATTTCCTTTCATTGTTCTTCTGGTGATACCGGGTCTAATTTACGGCAAGACTTTGTTGGGGTTGTCTAGTAAAATCAGAGATGAGTATAATGAAGCAGGAACAGTTGTGGAACAAGCAATTTCATCCATCAGAACCGTTTATTCCTTCGTTGGGGAAAGCCAGACCTTGAACGCTTTCTCAAACGCACTTCAAGGGACAGTGAAGTTAGGCCTGAAGCAAGGCTGGGCCAAAGGCTTAGCCATTGGTAGCAACGGCGTCGTTTTCGCCATTTGGTCTTTCATGTGCTATTACGGCAGCAGACTCGTTATTTATCATGGCGTTAAAGGAGGGACAGTTTTCGCCGTTGGAGCAGCCATCGCAGTTGGTGGATTGGGACTGGGAGCGGCTTTATCGAACGTGAAGTACTTTTCGGAGGCGGGTGCGGCGGCGGAGCGTATAAAGGAGGTGATAAAGAGGGTTCCGAGGATTGATTCTGAGAGCGAGGAAGGGGAGATTCTGGAGAGAGTTTATGGGGAAGTGGAATTTGACAGGGTGGAATTTGCGTACCCGTCGAGACCAGAGAGTGCAGTATTGAAGGGGTTGAGTGTGAGAATTCCGGCAGGGAAGAGAGTGGCGTTGGTGGGGGAGAGCGGGTCGGGGAAATCGACGGTGATAGCGCTATTGCAGAGGTTCTACGACCCACTGGGGGGAGAGGTGCGTTTGGATGGGGTGGGGATTCAGAAGCTGCAGGTGAAGTGGCTGCGTTCGCAGTTGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTTGCGACAAGCATTAAAGAAAACATACTTTTCGGCAGAGAGGATGCCACGGAGGACCAAGTGGTAGAGGCTGCAAAAGCTGCCCATGCTCATGATTTCATCTCGCTTCTGCCACACGGTTACCAAACACAGGTCGGAGAGAGGGGGATTCAGATGTCAGGGGGACAGAAACAGAGGATAGCGATTGCGAGGGCAATAATCAAGAAACCGCGAATTCTACTTCTGGACGAAGCAACAAGCGCGCTAGACACAGAATCCGAGCATCTCGTCCAAAAGGCACTGGACAACGCCGCCGCGGGTTGCACCGCTATCATCATCGCCCACCGTTTGTCCACCATCCAGAACGCGGACCTCATCGTCGTCGTCGCCGGCGGAAAGGTCGTAGAGATGGGCTCGCACGACGAGCTCCTCGAAAACGACACCAGCGCCTACGCCTCCTCTTTCCGCCTCCAGCAACAAACGAAGAAAGCGAATGTAGCCGAAAGCGCGGAAACCGATGCTCCAGGGAGTGTCACGAGCTCGGCATCATCGAAAGACACGGAAAACGCGCTACCGGTGGGGCCATTTGGTGGGAGTGGTACGGACGTGGCGGAAGGGAAGAAGGTACAGGCGCCGTCGTTTCACAGACTGGTATCCCTGAGTGTCCCCGAGTGGAAACACGTGGTTATGGGGTGCTTAAACGCGATGGTTTTCGGTGCCGTTCAGCCGGTTTACGCATTCACAATGGGGTCCACAATACTGTTGTATTTTCACGCGGATCATGAGGAGATAGTGAGGAAGACTAGGATCTACTCGTTCGCCTTTCTGGGCCTCTTTGTGGTGTCTTTCATTGCGAATGTTGGGCAGCATTATTGTTTCGCCTACATGGGGGAATACTTGACCAAACGGGTCAGAGAGACCGTGCTTTCCAAAATCCTCACTTTCGAAATTGGATGGTTTGATTTGGACGAAAACTCCAGTGGCGCCATCTGTTCCAGGCTTGCCAAAGACGCCAATGTGGTGAGGTCTCTAGTGGGAGATAGAATGGCACTGGTGGTACAGACATTTTCAGCGGTGATAACAGCCTACACAATGGGTCTGATAATTTCATGGAAGCTTTCCATTGTTATGATAGCGGTACAACCTATCATCATAGGATGCTTTTACACAAGACGTGTCCTTCTCAAGAGCATGTCCAACATGTCCATGAAGGCCCAGCAACAAAGCAGCAAACTGGCATCGGAAGCGGTTTCCAATCTCCGAACCGTGACCGCCTTTTCATCGCAGGAACGGATTCTGAAAATGCTTGAAGCGGCCCAGGAGGGCCCAAGCAGAGAGAACATTCGGCAGTCGTGGTTTGCTGGCATTGGGCTTGGAATCTCCCAAGGCCTTGCATCTTGCGTTTGGGCCCTAGACTTCTGGTACGGTGGGAAGCTCATCTCGTACGGACAAATAACAACAAAATCTTTCTTTGAGAGCTTCATGGTTTTGGTGAGCACTGGGAGGATAATTGCGGATGCGGGAAGCATGACAACGGATATTGCTAGAGGTGCTGATGTTGTGGCCTCTACTTTTGGCATCATAGATAGGAGTACAAAAATAGAGCCTGATGAGCCAAATGGGTACAAGACAGAGAAGTTGGTTGGTGAAATAGAGTTTCATGAGGTGCATTTCACGTACCCTACAAGGCCTGACGTGGCTATCTTCCAGGGGTTCTCGATGAAAATGGAGGCAGGGAAATCAACGGCGCTGGTGGGGCAAAGTGGATCTGGGAAATCAACGATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAGAGGGATGGTGACAATAGATGGAATGGACATAAGAAGGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGCCAGGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTACATATGGAAGAGGTGGGAGGGTTGATGAGAGTGAGATGATAGAGGCAGCACGAGCAGCGAACGCTCATGATTTCATAGCGGGTCTGAAGGAGGGGTACGAGACATGGTGTGGGGAAAAAGGGGTACAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCGAGGGCCATATTGAAAAATCCTAAGGTGTTGCTGTTGGACGAGGCCACAAGTGCATTGGATAGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACACAGGTTGAGCACCATTCACCATTGTGATGCTATTGCTGTGATGGAAAAGGGAAGGGTGGTGGAGACTGGAACCCACTCCTCCTTGTTGGCCAAAGGGCCATGTGGAGCTTATTACTCTTTGGTCACCCTTCAGACTAGACATGCAGCCACACTCAACAACACTTGTACTAAAGCTTCCCACTCTCTCACTTGA | 3744 | 0.5003 | MVSQERKKKIKNGSYGFGSIFMHADRKDLLFMILGTFGSVGEGFATPLVLFISSRMMNNIGSSSNMQGNTFIHNIDKNAVAWLYLALGSFAVCFMEGYCWTRTSERQAARMRFRYLKAVLRQDIAYFDMHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFIVLLVIPGLIYGKTLLGLSSKIRDEYNEAGTVVEQAISSIRTVYSFVGESQTLNAFSNALQGTVKLGLKQGWAKGLAIGSNGVVFAIWSFMCYYGSRLVIYHGVKGGTVFAVGAAIAVGGLGLGAALSNVKYFSEAGAAAERIKEVIKRVPRIDSESEEGEILERVYGEVEFDRVEFAYPSRPESAVLKGLSVRIPAGKRVALVGESGSGKSTVIALLQRFYDPLGGEVRLDGVGIQKLQVKWLRSQLGLVSQEPALFATSIKENILFGREDATEDQVVEAAKAAHAHDFISLLPHGYQTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDTESEHLVQKALDNAAAGCTAIIIAHRLSTIQNADLIVVVAGGKVVEMGSHDELLENDTSAYASSFRLQQQTKKANVAESAETDAPGSVTSSASSKDTENALPVGPFGGSGTDVAEGKKVQAPSFHRLVSLSVPEWKHVVMGCLNAMVFGAVQPVYAFTMGSTILLYFHADHEEIVRKTRIYSFAFLGLFVVSFIANVGQHYCFAYMGEYLTKRVRETVLSKILTFEIGWFDLDENSSGAICSRLAKDANVVRSLVGDRMALVVQTFSAVITAYTMGLIISWKLSIVMIAVQPIIIGCFYTRRVLLKSMSNMSMKAQQQSSKLASEAVSNLRTVTAFSSQERILKMLEAAQEGPSRENIRQSWFAGIGLGISQGLASCVWALDFWYGGKLISYGQITTKSFFESFMVLVSTGRIIADAGSMTTDIARGADVVASTFGIIDRSTKIEPDEPNGYKTEKLVGEIEFHEVHFTYPTRPDVAIFQGFSMKMEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGMVTIDGMDIRRYNLKSLRKHIALVSQEPTLFGGTIRENITYGRGGRVDESEMIEAARAANAHDFIAGLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHHCDAIAVMEKGRVVETGTHSSLLAKGPCGAYYSLVTLQTRHAATLNNTCTKASHSLT | 1247 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun5g01880 | 1247 | Gene3D | ABC transporter type 1, transmembrane domain | 20 | 611 | IPR036640 | GO:0005524|GO:0016020 | |
Viun5g01880 | 1247 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 32 | 330 | - | - | |
Viun5g01880 | 1247 | PANTHER | ABC TRANSPORTER B FAMILY | 5 | 724 | IPR039421 | - | |
Viun5g01880 | 1247 | MobiDBLite | consensus disorder prediction | 599 | 625 | - | - | |
Viun5g01880 | 1247 | FunFam | ABC transporter B family member 1 | 19 | 354 | - | - | |
Viun5g01880 | 1247 | Pfam | ABC transporter transmembrane region | 666 | 936 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Viun5g01880 | 1247 | Pfam | ABC transporter transmembrane region | 32 | 300 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Viun5g01880 | 1247 | SMART | AAA_5 | 1015 | 1202 | IPR003593 | GO:0016887 | |
Viun5g01880 | 1247 | SMART | AAA_5 | 384 | 578 | IPR003593 | GO:0016887 | |
Viun5g01880 | 1247 | FunFam | ABC transporter B family member 4 | 978 | 1235 | - | - | |
Viun5g01880 | 1247 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 349 | 595 | IPR027417 | - | |
Viun5g01880 | 1247 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 656 | 971 | - | - | |
Viun5g01880 | 1247 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 978 | 1228 | IPR027417 | - | |
Viun5g01880 | 1247 | SUPERFAMILY | ABC transporter transmembrane region | 22 | 341 | IPR036640 | GO:0005524|GO:0016020 | |
Viun5g01880 | 1247 | Gene3D | ABC transporter type 1, transmembrane domain | 645 | 954 | IPR036640 | GO:0005524|GO:0016020 | |
Viun5g01880 | 1247 | FunFam | ABC transporter B family member 4 | 347 | 602 | - | - | |
Viun5g01880 | 1247 | Pfam | ABC transporter | 375 | 524 | IPR003439 | GO:0005524 | |
Viun5g01880 | 1247 | ProSitePatterns | ABC transporters family signature. | 496 | 510 | IPR017871 | GO:0005524|GO:0016887 | |
Viun5g01880 | 1247 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 988 | 1225 | IPR003439 | GO:0005524 | |
Viun5g01880 | 1247 | CDD | ABC_MTABC3_MDL1_MDL2 | 988 | 1228 | - | - | |
Viun5g01880 | 1247 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 33 | 322 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Viun5g01880 | 1247 | CDD | ABC_MTABC3_MDL1_MDL2 | 357 | 595 | - | - | |
Viun5g01880 | 1247 | Gene3D | - | 978 | 1229 | IPR027417 | - | |
Viun5g01880 | 1247 | Gene3D | - | 347 | 596 | IPR027417 | - | |
Viun5g01880 | 1247 | SUPERFAMILY | ABC transporter transmembrane region | 652 | 972 | IPR036640 | GO:0005524|GO:0016020 | |
Viun5g01880 | 1247 | ProSitePatterns | ABC transporters family signature. | 1128 | 1142 | IPR017871 | GO:0005524|GO:0016887 | |
Viun5g01880 | 1247 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 357 | 593 | IPR003439 | GO:0005524 | |
Viun5g01880 | 1247 | FunFam | Putative ABC transporter B family member 8 | 634 | 976 | - | - | |
Viun5g01880 | 1247 | Pfam | ABC transporter | 1007 | 1156 | IPR003439 | GO:0005524 | |
Viun5g01880 | 1247 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 672 | 953 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Viun5g01880 | 1247 | Gene3D | ABC transporter type 1, transmembrane domain | 957 | 1233 | IPR036640 | GO:0005524|GO:0016020 | |
Viun5g01880 | 1247 | MobiDBLite | consensus disorder prediction | 599 | 629 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun5g01880 | Viun-Chr5 | 17945095 | 17952763 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun5g01880 | 31 | 598 | Calmodulin-binding Proteins | AT2G36910 | 37.088 | 2.07e-102 | 352 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun5g01880 | K05658 | - | gmx:100791575 | 2033.07 |