Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01880 ATGGTTAGCCAGGAGAGAAAGAAGAAGATAAAAAACGGGTCTTATGGGTTTGGGTCCATTTTCATGCATGCCGATCGCAAAGATTTGCTTTTTATGATTTTAGGTACCTTTGGGTCTGTTGGGGAAGGCTTTGCCACCCCTCTAGTCTTGTTTATCAGCAGCCGCATGATGAATAACATTGGGAGTTCATCCAACATGCAAGGGAACACCTTCATCCATAACATCGACAAGAATGCAGTGGCGTGGTTATATTTAGCTCTTGGCTCTTTTGCCGTTTGCTTCATGGAGGGTTACTGTTGGACAAGAACAAGCGAAAGACAGGCAGCGAGAATGAGATTCAGGTATCTGAAAGCAGTGCTTCGACAAGATATTGCGTACTTTGATATGCATGTCACAAGCACGTCAGAGATCATCACCAGCGTCTCCAACGACAGCCTCGTAATCCAAGATGTTCTCAGTGAAAAGGTTCCGAATTTCTTGATGAACATTTCGTTGTTCGTTGGGAGCTACATAGCGGCGTTTGCAATGTTGTGGAGGCTGGCCATAGTGGGATTTCCTTTCATTGTTCTTCTGGTGATACCGGGTCTAATTTACGGCAAGACTTTGTTGGGGTTGTCTAGTAAAATCAGAGATGAGTATAATGAAGCAGGAACAGTTGTGGAACAAGCAATTTCATCCATCAGAACCGTTTATTCCTTCGTTGGGGAAAGCCAGACCTTGAACGCTTTCTCAAACGCACTTCAAGGGACAGTGAAGTTAGGCCTGAAGCAAGGCTGGGCCAAAGGCTTAGCCATTGGTAGCAACGGCGTCGTTTTCGCCATTTGGTCTTTCATGTGCTATTACGGCAGCAGACTCGTTATTTATCATGGCGTTAAAGGAGGGACAGTTTTCGCCGTTGGAGCAGCCATCGCAGTTGGTGGATTGGGACTGGGAGCGGCTTTATCGAACGTGAAGTACTTTTCGGAGGCGGGTGCGGCGGCGGAGCGTATAAAGGAGGTGATAAAGAGGGTTCCGAGGATTGATTCTGAGAGCGAGGAAGGGGAGATTCTGGAGAGAGTTTATGGGGAAGTGGAATTTGACAGGGTGGAATTTGCGTACCCGTCGAGACCAGAGAGTGCAGTATTGAAGGGGTTGAGTGTGAGAATTCCGGCAGGGAAGAGAGTGGCGTTGGTGGGGGAGAGCGGGTCGGGGAAATCGACGGTGATAGCGCTATTGCAGAGGTTCTACGACCCACTGGGGGGAGAGGTGCGTTTGGATGGGGTGGGGATTCAGAAGCTGCAGGTGAAGTGGCTGCGTTCGCAGTTGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTTGCGACAAGCATTAAAGAAAACATACTTTTCGGCAGAGAGGATGCCACGGAGGACCAAGTGGTAGAGGCTGCAAAAGCTGCCCATGCTCATGATTTCATCTCGCTTCTGCCACACGGTTACCAAACACAGGTCGGAGAGAGGGGGATTCAGATGTCAGGGGGACAGAAACAGAGGATAGCGATTGCGAGGGCAATAATCAAGAAACCGCGAATTCTACTTCTGGACGAAGCAACAAGCGCGCTAGACACAGAATCCGAGCATCTCGTCCAAAAGGCACTGGACAACGCCGCCGCGGGTTGCACCGCTATCATCATCGCCCACCGTTTGTCCACCATCCAGAACGCGGACCTCATCGTCGTCGTCGCCGGCGGAAAGGTCGTAGAGATGGGCTCGCACGACGAGCTCCTCGAAAACGACACCAGCGCCTACGCCTCCTCTTTCCGCCTCCAGCAACAAACGAAGAAAGCGAATGTAGCCGAAAGCGCGGAAACCGATGCTCCAGGGAGTGTCACGAGCTCGGCATCATCGAAAGACACGGAAAACGCGCTACCGGTGGGGCCATTTGGTGGGAGTGGTACGGACGTGGCGGAAGGGAAGAAGGTACAGGCGCCGTCGTTTCACAGACTGGTATCCCTGAGTGTCCCCGAGTGGAAACACGTGGTTATGGGGTGCTTAAACGCGATGGTTTTCGGTGCCGTTCAGCCGGTTTACGCATTCACAATGGGGTCCACAATACTGTTGTATTTTCACGCGGATCATGAGGAGATAGTGAGGAAGACTAGGATCTACTCGTTCGCCTTTCTGGGCCTCTTTGTGGTGTCTTTCATTGCGAATGTTGGGCAGCATTATTGTTTCGCCTACATGGGGGAATACTTGACCAAACGGGTCAGAGAGACCGTGCTTTCCAAAATCCTCACTTTCGAAATTGGATGGTTTGATTTGGACGAAAACTCCAGTGGCGCCATCTGTTCCAGGCTTGCCAAAGACGCCAATGTGGTGAGGTCTCTAGTGGGAGATAGAATGGCACTGGTGGTACAGACATTTTCAGCGGTGATAACAGCCTACACAATGGGTCTGATAATTTCATGGAAGCTTTCCATTGTTATGATAGCGGTACAACCTATCATCATAGGATGCTTTTACACAAGACGTGTCCTTCTCAAGAGCATGTCCAACATGTCCATGAAGGCCCAGCAACAAAGCAGCAAACTGGCATCGGAAGCGGTTTCCAATCTCCGAACCGTGACCGCCTTTTCATCGCAGGAACGGATTCTGAAAATGCTTGAAGCGGCCCAGGAGGGCCCAAGCAGAGAGAACATTCGGCAGTCGTGGTTTGCTGGCATTGGGCTTGGAATCTCCCAAGGCCTTGCATCTTGCGTTTGGGCCCTAGACTTCTGGTACGGTGGGAAGCTCATCTCGTACGGACAAATAACAACAAAATCTTTCTTTGAGAGCTTCATGGTTTTGGTGAGCACTGGGAGGATAATTGCGGATGCGGGAAGCATGACAACGGATATTGCTAGAGGTGCTGATGTTGTGGCCTCTACTTTTGGCATCATAGATAGGAGTACAAAAATAGAGCCTGATGAGCCAAATGGGTACAAGACAGAGAAGTTGGTTGGTGAAATAGAGTTTCATGAGGTGCATTTCACGTACCCTACAAGGCCTGACGTGGCTATCTTCCAGGGGTTCTCGATGAAAATGGAGGCAGGGAAATCAACGGCGCTGGTGGGGCAAAGTGGATCTGGGAAATCAACGATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAGAGGGATGGTGACAATAGATGGAATGGACATAAGAAGGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTTGTGAGCCAGGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTACATATGGAAGAGGTGGGAGGGTTGATGAGAGTGAGATGATAGAGGCAGCACGAGCAGCGAACGCTCATGATTTCATAGCGGGTCTGAAGGAGGGGTACGAGACATGGTGTGGGGAAAAAGGGGTACAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCGAGGGCCATATTGAAAAATCCTAAGGTGTTGCTGTTGGACGAGGCCACAAGTGCATTGGATAGTCAATCAGAGAAGGTGGTGCAAGATACGTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACACAGGTTGAGCACCATTCACCATTGTGATGCTATTGCTGTGATGGAAAAGGGAAGGGTGGTGGAGACTGGAACCCACTCCTCCTTGTTGGCCAAAGGGCCATGTGGAGCTTATTACTCTTTGGTCACCCTTCAGACTAGACATGCAGCCACACTCAACAACACTTGTACTAAAGCTTCCCACTCTCTCACTTGA 3744 0.5003 MVSQERKKKIKNGSYGFGSIFMHADRKDLLFMILGTFGSVGEGFATPLVLFISSRMMNNIGSSSNMQGNTFIHNIDKNAVAWLYLALGSFAVCFMEGYCWTRTSERQAARMRFRYLKAVLRQDIAYFDMHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFIVLLVIPGLIYGKTLLGLSSKIRDEYNEAGTVVEQAISSIRTVYSFVGESQTLNAFSNALQGTVKLGLKQGWAKGLAIGSNGVVFAIWSFMCYYGSRLVIYHGVKGGTVFAVGAAIAVGGLGLGAALSNVKYFSEAGAAAERIKEVIKRVPRIDSESEEGEILERVYGEVEFDRVEFAYPSRPESAVLKGLSVRIPAGKRVALVGESGSGKSTVIALLQRFYDPLGGEVRLDGVGIQKLQVKWLRSQLGLVSQEPALFATSIKENILFGREDATEDQVVEAAKAAHAHDFISLLPHGYQTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDTESEHLVQKALDNAAAGCTAIIIAHRLSTIQNADLIVVVAGGKVVEMGSHDELLENDTSAYASSFRLQQQTKKANVAESAETDAPGSVTSSASSKDTENALPVGPFGGSGTDVAEGKKVQAPSFHRLVSLSVPEWKHVVMGCLNAMVFGAVQPVYAFTMGSTILLYFHADHEEIVRKTRIYSFAFLGLFVVSFIANVGQHYCFAYMGEYLTKRVRETVLSKILTFEIGWFDLDENSSGAICSRLAKDANVVRSLVGDRMALVVQTFSAVITAYTMGLIISWKLSIVMIAVQPIIIGCFYTRRVLLKSMSNMSMKAQQQSSKLASEAVSNLRTVTAFSSQERILKMLEAAQEGPSRENIRQSWFAGIGLGISQGLASCVWALDFWYGGKLISYGQITTKSFFESFMVLVSTGRIIADAGSMTTDIARGADVVASTFGIIDRSTKIEPDEPNGYKTEKLVGEIEFHEVHFTYPTRPDVAIFQGFSMKMEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGMVTIDGMDIRRYNLKSLRKHIALVSQEPTLFGGTIRENITYGRGGRVDESEMIEAARAANAHDFIAGLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKVVQDTLMRVMIGRTSVVVAHRLSTIHHCDAIAVMEKGRVVETGTHSSLLAKGPCGAYYSLVTLQTRHAATLNNTCTKASHSLT 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01880 1247 Gene3D ABC transporter type 1, transmembrane domain 20 611 IPR036640 GO:0005524|GO:0016020
Viun5g01880 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 330 - -
Viun5g01880 1247 PANTHER ABC TRANSPORTER B FAMILY 5 724 IPR039421 -
Viun5g01880 1247 MobiDBLite consensus disorder prediction 599 625 - -
Viun5g01880 1247 FunFam ABC transporter B family member 1 19 354 - -
Viun5g01880 1247 Pfam ABC transporter transmembrane region 666 936 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g01880 1247 Pfam ABC transporter transmembrane region 32 300 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g01880 1247 SMART AAA_5 1015 1202 IPR003593 GO:0016887
Viun5g01880 1247 SMART AAA_5 384 578 IPR003593 GO:0016887
Viun5g01880 1247 FunFam ABC transporter B family member 4 978 1235 - -
Viun5g01880 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 595 IPR027417 -
Viun5g01880 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 656 971 - -
Viun5g01880 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 978 1228 IPR027417 -
Viun5g01880 1247 SUPERFAMILY ABC transporter transmembrane region 22 341 IPR036640 GO:0005524|GO:0016020
Viun5g01880 1247 Gene3D ABC transporter type 1, transmembrane domain 645 954 IPR036640 GO:0005524|GO:0016020
Viun5g01880 1247 FunFam ABC transporter B family member 4 347 602 - -
Viun5g01880 1247 Pfam ABC transporter 375 524 IPR003439 GO:0005524
Viun5g01880 1247 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524|GO:0016887
Viun5g01880 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 988 1225 IPR003439 GO:0005524
Viun5g01880 1247 CDD ABC_MTABC3_MDL1_MDL2 988 1228 - -
Viun5g01880 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g01880 1247 CDD ABC_MTABC3_MDL1_MDL2 357 595 - -
Viun5g01880 1247 Gene3D - 978 1229 IPR027417 -
Viun5g01880 1247 Gene3D - 347 596 IPR027417 -
Viun5g01880 1247 SUPERFAMILY ABC transporter transmembrane region 652 972 IPR036640 GO:0005524|GO:0016020
Viun5g01880 1247 ProSitePatterns ABC transporters family signature. 1128 1142 IPR017871 GO:0005524|GO:0016887
Viun5g01880 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 593 IPR003439 GO:0005524
Viun5g01880 1247 FunFam Putative ABC transporter B family member 8 634 976 - -
Viun5g01880 1247 Pfam ABC transporter 1007 1156 IPR003439 GO:0005524
Viun5g01880 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 953 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun5g01880 1247 Gene3D ABC transporter type 1, transmembrane domain 957 1233 IPR036640 GO:0005524|GO:0016020
Viun5g01880 1247 MobiDBLite consensus disorder prediction 599 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01880 Viun-Chr5 17945095 17952763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01880 31 598 Calmodulin-binding Proteins AT2G36910 37.088 2.07e-102 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01880 K05658 - gmx:100791575 2033.07