Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01836 ATGTACGGCGGTGACAGCGACAGCAGCAGCGACGGCGGAGAGCGTAGCCGGCGCTGGGAGATGCTGGACTTCCAGAACCTGAAGGTGGTGTCGGCGGTGGGACGCGGTGCCAAGGGCGTGGTGTTCCTGGCGCGGGTGGAGGCGGGGGGAAGCGGAGACTGGTTGGCGCTGAAGGTGGTGTCGAAGGAGCTGCTAAGGAAGAAGAACAGGAACGAGGGAAGGTGCAAGAGGGTGTCGTTCGAGAGGCACATACTACGTCGTTTTGATCACCCGCTATTGCCCAGGTTCCGAGGCTCCCTCGACACCGACCAACTCACCGGCTTCGCAATCGATTATTGCCACGGCGGAACCCTCCATTTGCTTCGGAAGAAGCAACCGGAGAAGACCTTCTCCGAAGAAACCGTAAGGTTTTATGCAGTAGAATTGGTTCTAGCGTTGGAGTATTTGCACAGCTTTGGAGTAGTGTATAGAGATTTAAAGCCAGAGAATATCATGATCCAAGAATCAGGTCACATAATGTTAGTGGATTTTGACCTTTCCAAGAAGTTATACCTGCGCTTAACTTCGCCGTCGAGTAGCAACTCATCGCCGGGTTCTGACTCGCCACCGGAGAAGGAGAAGGATCGGAGGAAGCGACGACTATCACGATTCAGCTGTTACTGCCATTCAGGGATATCCCTATACGACTCAGATATCCCGAGTCAACTCAACGTCATCCCAACGGGTCGCAGCATGTCGGACTCAGTGGAAAAGTCGAACTCCTTTGTCGGAACGGAAGATTACGTGGCACCGGAAGTCATCTCCGGAGAAGGACACGACTTCGCCGTTGATTGGTGGTCATTGGGCATTGTTCTGTACGAGTTGATCTACGGAGCGACGCCGTTTAAGGGCGCCAATAGGAAAGAAACGTTTCATCGTATCATAACGAAGGAACCCGATTTATCAGGTGCAACAACGCCTTTGAGGGACTTGATTAAAAAGTTGCTTCACAAGGATCCTAACCGTAGGATCCAGGTGAACGAGATCAAGAGGCACGATTTCTTCAAAGGGGTGCAGTGGGATACGATCTTGGAAATCTCACGTCCACCGTATATTCCTCAGAATGAGATAAAGGATTCATTAGGGTTTTCACAGAAGGATGTTGAATCGTTTGTTCATGGAATATTTTTTCCCAAGAGTAAAGAGGAGGAAGATAAAACAAAAAAAGGGGAAGCAAAAAATAATGAAGAGGAAACCCCAAAGGAGGAAAATGATAAAAAGGAGGAAACTAATAAAAATGTGTGGGTTGACAAATTAAATCAAAATTCTTCTAAGGATGAAAATTTTTTAATTTTTTGA 1338 0.4851 MYGGDSDSSSDGGERSRRWEMLDFQNLKVVSAVGRGAKGVVFLARVEAGGSGDWLALKVVSKELLRKKNRNEGRCKRVSFERHILRRFDHPLLPRFRGSLDTDQLTGFAIDYCHGGTLHLLRKKQPEKTFSEETVRFYAVELVLALEYLHSFGVVYRDLKPENIMIQESGHIMLVDFDLSKKLYLRLTSPSSSNSSPGSDSPPEKEKDRRKRRLSRFSCYCHSGISLYDSDIPSQLNVIPTGRSMSDSVEKSNSFVGTEDYVAPEVISGEGHDFAVDWWSLGIVLYELIYGATPFKGANRKETFHRIITKEPDLSGATTPLRDLIKKLLHKDPNRRIQVNEIKRHDFFKGVQWDTILEISRPPYIPQNEIKDSLGFSQKDVESFVHGIFFPKSKEEEDKTKKGEAKNNEEETPKEENDKKEETNKNVWVDKLNQNSSKDENFLIF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01836 445 Gene3D Transferase(Phosphotransferase) domain 1 117 183 - -
Viun5g01836 445 ProSiteProfiles Protein kinase domain profile. 27 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01836 445 MobiDBLite consensus disorder prediction 188 211 - -
Viun5g01836 445 FunFam Serine/threonine-protein kinase OXI1 117 184 - -
Viun5g01836 445 Gene3D Transferase(Phosphotransferase) domain 1 249 367 - -
Viun5g01836 445 SMART serkin_6 27 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01836 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Viun5g01836 445 MobiDBLite consensus disorder prediction 395 445 - -
Viun5g01836 445 MobiDBLite consensus disorder prediction 395 427 - -
Viun5g01836 445 ProSiteProfiles AGC-kinase C-terminal domain profile. 349 445 IPR000961 GO:0004674|GO:0005524|GO:0006468
Viun5g01836 445 PANTHER FLIPPASE KINASE 1-RELATED 20 371 - -
Viun5g01836 445 MobiDBLite consensus disorder prediction 428 445 - -
Viun5g01836 445 Gene3D Phosphorylase Kinase; domain 1 27 116 - -
Viun5g01836 445 FunFam Serine/threonine-protein kinase OXI1 250 367 - -
Viun5g01836 445 Pfam Protein kinase domain 250 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01836 445 Pfam Protein kinase domain 29 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01836 445 SUPERFAMILY Protein kinase-like (PK-like) 25 374 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01836 Viun-Chr5 16935554 16937518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01836 11 445 AGC Kinase Gene Family AT3G25250 51.802 9.19e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun5g01836 Pkinase 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01836 K20714 - gmx:100813693 636.721