Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01827 ATGCCTCCAAAACTAGAGGATTTCTCGTCTGTGGCAAAACAAGCGGACCTACTTCGAAAACACGGCAATAATTACTTCAAGAAACACCATTTTGGAGCTGCCATTGACGCTTACACTCAGGCGATTGCACTGTGCCCCGATGTTCCGGTGTATTGGACCAATCGCGCTCTCTGTCATCTCAAGCGCAGTAATTGGACCAGAGTAGAGGAAGACTCTCGCGAAGCAATCAAGCTTGACAGCAATTTGGTTAAGGCCCACTATATGTTAGGTCTTGCATTGGTAAAGAGACAAGAGTTTGCTAAAGGAATCTTAGAATTGAAGAAGGCTTTGGATCTTGATAGAGGTTCCCATCCTAGTGGCGAAATGGTAGAAGAAATATGGCAAGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACATTCATACGTTAAGCGATCATGGGAACTGCAGAACTTGAAAGAAGCTTGTGAGGATGCTCTAAAGCAAAAGCATTTTCTCGAAGTCCCCCACACAGAAGGATCTGTAGAAGATGATACTACCCATTTAGAACAGTTAGAGGCTTTAGGAAAAGTGTTTGTTAAAGTTGCAGAACATGACATGCCTACTGAGGTGCCAGATTATCTGTGCTGTAGAATCTCACTTGATATTTTCTGTGATCCTGTGATTACCCCAAGTGGACTTACATACGAGAAAACAGTGATCATTGATCATCTTGAGAAGGTGGGTAAGTTTGATCCAGTGACTCGAGAACCTCTCGATCCATCACAGCTAATACCAAACCTAGCCATAAAGCAAGCAGTTGAGGCATTCTTGGAGAAACATGGGTGGGCATACAAAGATATATTAACAAAAACCTTTTAG 861 0.4286 MPPKLEDFSSVAKQADLLRKHGNNYFKKHHFGAAIDAYTQAIALCPDVPVYWTNRALCHLKRSNWTRVEEDSREAIKLDSNLVKAHYMLGLALVKRQEFAKGILELKKALDLDRGSHPSGEMVEEIWQELAKAKYLEWEHSYVKRSWELQNLKEACEDALKQKHFLEVPHTEGSVEDDTTHLEQLEALGKVFVKVAEHDMPTEVPDYLCCRISLDIFCDPVITPSGLTYEKTVIIDHLEKVGKFDPVTREPLDPSQLIPNLAIKQAVEAFLEKHGWAYKDILTKTF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01827 286 Pfam Tetratricopeptide repeat 20 66 - -
Viun5g01827 286 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Viun5g01827 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 279 IPR045200 GO:0000209|GO:0061630
Viun5g01827 286 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Viun5g01827 286 CDD RING-Ubox_CHIP 204 274 IPR045202 -
Viun5g01827 286 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Viun5g01827 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Viun5g01827 286 SUPERFAMILY RING/U-box 198 280 - -
Viun5g01827 286 SUPERFAMILY TPR-like 13 134 IPR011990 GO:0005515
Viun5g01827 286 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Viun5g01827 286 Gene3D Tetratricopeptide repeat domain 7 168 IPR011990 GO:0005515
Viun5g01827 286 SMART tpr_5 83 116 IPR019734 GO:0005515
Viun5g01827 286 SMART tpr_5 49 82 IPR019734 GO:0005515
Viun5g01827 286 SMART tpr_5 15 48 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01827 Viun-Chr5 16809994 16813657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01827 15 279 U-box Gene Family AT3G07370 64.286 1.28e-128 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01827 K09561 - gmx:100796519 419.083