Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01814 ATGGAAAACCAGTTCTTCCTCAATGCTCCTCAGCTGCATTATGACCCTTCACCACCTCCTTGTCCACCCTCTTGGCACTCACTCTCTTCTCCCATGGATGTTCAAGTTTTGAATTCTTCAACCGAGAGAACACAGGATTGCTTTTACACACCGCCGTGGGAGAAGTCAACGGATCATGCTCTTCACTTTGATTCTGCACTCAGTTCAATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAACTGACAACTTTGTCATCAGGGAGTTGATAGGGAAATTGGGAAACATTGGTGGTGGTGCTGGTGGCTCTGATGAGATCTCACCTCATTCTCAGCCTTTGCTTGCTGCTGCATCTTCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCCAAGATCCCCACAATGATGAATCACTTGGTGAAAGAGGGGTTGAATTCCAGTGTGGCAGAATTCTCAACTGATCCTGGTTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCCACCAATGCCGAGTTGACTCACAGATCTTCTTCTCCATTGCTGGAAAATGGGAAGCTCCCCAGAGTCTCAAGTACTCCATCTCTCAAAGTGCTTGGATCTCTGGTGAGTTCTCAGGAGAACAAGAATTCTCCATTGCAAGACCAAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCAGAACAGATTCCAAATGGGGACAATGGGGTGAAACCTTCCCCTTATGCGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACTTCAACTTCAACCCCCACCAACACCAACACCAACCCCAACCCCAACCCCAACCCCAACCCCCCTATGGCTGCTGAAGCCAGTGAAGATTCAAATGCAAAGCGCAGCAAAACTAACGAAGGTGAGGGCAATGAAAAGGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGTAACTAGTAATGCAAATGACGACAAACAGAACAAGAGTAACTCAAAACCCCCAGAGCCTCCAAAGGATTATATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGTCACAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGTGAAAGAATGAAACTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTGACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTGCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCCATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCGAAAGATATATTTCAATCAAATAATTCTTTGGCACAGCCAATATTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAACCAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGTCCCACAACTCAGTGGACCCATTGGATTCTGGTTTGTGCCAAAACCTTGGCATGCAGTTACCTCACCTAAGTGCCTTTAATGAAGGTGCCTCTCAGTATCCAATAGCATTCTCTGAAGATGACCTCCACACCATTGTTCAAATGGGTTTTGGCCAAACTGCAAATGGGAAAACAGCAGTACAAGCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1719 0.4567 MENQFFLNAPQLHYDPSPPPCPPSWHSLSSPMDVQVLNSSTERTQDCFYTPPWEKSTDHALHFDSALSSMVSSPAASNSNMSTDNFVIRELIGKLGNIGGGAGGSDEISPHSQPLLAAASSSYINGNNSTNTSCYSTPLSSPPKIPTMMNHLVKEGLNSSVAEFSTDPGFAERAAKFSCFGSRSFNGRTTQLGPTNAELTHRSSSPLLENGKLPRVSSTPSLKVLGSLVSSQENKNSPLQDQMEVANSQEESTISEQIPNGDNGVKPSPYANSRKRKGPSKGKAKETSTSTSTPTNTNTNPNPNPNPNPPMAAEASEDSNAKRSKTNEGEGNEKGQVKAEEESKGVTSNANDDKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAQPIFPLDSSAPAFYGQHPQPNPAIHSNIPNGTVSHNSVDPLDSGLCQNLGMQLPHLSAFNEGASQYPIAFSEDDLHTIVQMGFGQTANGKTAVQAQSFNGSNQVPL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01814 572 MobiDBLite consensus disorder prediction 284 299 - -
Viun5g01814 572 MobiDBLite consensus disorder prediction 185 262 - -
Viun5g01814 572 MobiDBLite consensus disorder prediction 318 348 - -
Viun5g01814 572 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 257 484 IPR024097 GO:0006355
Viun5g01814 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 447 IPR036638 GO:0046983
Viun5g01814 572 CDD bHLH_AtBPE_like 368 453 - -
Viun5g01814 572 FunFam Basic helix-loop-helix transcription factor 375 447 - -
Viun5g01814 572 SMART finulus 384 434 IPR011598 GO:0046983
Viun5g01814 572 MobiDBLite consensus disorder prediction 185 369 - -
Viun5g01814 572 Coils Coil 425 445 - -
Viun5g01814 572 Gene3D - 375 450 IPR036638 GO:0046983
Viun5g01814 572 Pfam Helix-loop-helix DNA-binding domain 382 429 IPR011598 GO:0046983
Viun5g01814 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 428 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01814 Viun-Chr5 16589516 16592506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01814 1 538 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.987 3.12e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun5g01814 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01814 - - gmx:100787699 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01814 5 16589516 16592506 Viun10g00598 10 5527831 5531260 PCT