Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun5g01795 | ATGGTGAATACACTTGACAAGGAAAAGGGTATCACACTGGAGGATTTTAAGCTCATTAAGATGCATATGGCCAGTTATATTTTGAAATTGGCACAACAAGTAAAAGTGAGACAGAGGGTTGTGGCCACAGCAGTTACATACATGAGGCGTGTTTACACCAAGAAGAGTATGACAGAATATGATCCACGCTTGGTAGCTCCAACATGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAAGCTCGGCTTCTTGTATTTTACATTAAAAAGCTATATGCTGATGAGAAGTATAGATATGAAATCAAGGACATACTTGAAATGGAAATGAAGGTTTTAGAAGCTCTTAATTATTACCTGGTTGTATACCACCCATACCGTTCACTATCTCCGTTGCTTCAGGATGCTGGTTTGAATGATCTAAACATGACTCAGTTAACTTGGGGCCTTGTAAATGACACATACAAGATGGACCTAATTCTTGTACATCCTCCGCATTTGATTGCTTTAGCTTGCATATATATTGCTAGTGTACTTAGGGATAAAGACACCACTGCTTGGTTTGAAGAACTTCGTGTTGACATGAACGTGGTCAAAAACATATCAATGGAGATACTTGATTTTTATGAAAGCCATAGAATGTTCACTGAGGAAAGAATCAATGCTGCTCTCCAGAAGTTGACCTTGAGACCCTAA | 699 | 0.392 | MVNTLDKEKGITLEDFKLIKMHMASYILKLAQQVKVRQRVVATAVTYMRRVYTKKSMTEYDPRLVAPTCLYLASKAEESTVQARLLVFYIKKLYADEKYRYEIKDILEMEMKVLEALNYYLVVYHPYRSLSPLLQDAGLNDLNMTQLTWGLVNDTYKMDLILVHPPHLIALACIYIASVLRDKDTTAWFEELRVDMNVVKNISMEILDFYESHRMFTEERINAALQKLTLRP | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun5g01795 | 232 | Gene3D | - | 123 | 220 | - | - | |
| Viun5g01795 | 232 | FunFam | cyclin-C1-2-like isoform X1 | 1 | 122 | - | - | |
| Viun5g01795 | 232 | SUPERFAMILY | Cyclin-like | 125 | 221 | IPR036915 | - | |
| Viun5g01795 | 232 | Pfam | Cyclin, N-terminal domain | 22 | 121 | IPR006671 | - | |
| Viun5g01795 | 232 | SMART | cyclin_7 | 25 | 115 | IPR013763 | - | |
| Viun5g01795 | 232 | SMART | cyclin_7 | 128 | 208 | IPR013763 | - | |
| Viun5g01795 | 232 | SUPERFAMILY | Cyclin-like | 3 | 123 | IPR036915 | - | |
| Viun5g01795 | 232 | PIRSF | Cyclin_C_H_G | 2 | 232 | - | - | |
| Viun5g01795 | 232 | Gene3D | - | 7 | 122 | - | - | |
| Viun5g01795 | 232 | PANTHER | CYCLIN | 4 | 217 | IPR043198 | GO:0006357|GO:0016538 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun5g01795 | Viun-Chr5 | 16243921 | 16254037 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun5g01795 | 7 | 178 | Core Cell Cycle Gene Families | AT5G27620 | 25.824 | 1.42e-11 | 61.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun5g01795 | K15161 | - | gmx:100784345 | 424.861 |