Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01737 ATGAATAAGAGAAACAAGCAAAAGTTTCGACAAGATGCACCCACAGGTCTTACAAGTCAATCAGAGAGTGAAGACGATGACGAAGTGTGGTATCCTTTTGACCTGGAAGCCCTGCGAAAGGATGTTGAATGCCCAATCTGCCTTGGGATCATTCGAAATGCAAGAGTTGTCATGGAATGCATGCATCGCTTTTGCAAGGAGTGCATAGAGAAATCCTTTCGCCTCGGTAACAATGAATGCCCTACTTGTCGTACTCATTGTTCAAGCCGAAGATCACTAAGGGAAGACCGTCTCTTTGATGAATTGATTTCTGTCATTTATCCAAACATTGATGAATACGAGGAAAAGGAAATGACTCTCTCTAATGATGCAAAAAATAATATAAAGTCGATGCAAGAAGCATATGGCAAGACTCTTGAACGACAAAATGAGGCAGCGGGAAAGAAGGGTGCTGCTGCTGCAACATCTAGGTCCTCAAGGACTGCAACACTGAGAAGAAGTGCAAGAAATGCAGAATCTAATTCTAGCAGGGACATCACATTGCCTCCTATTGCTGAAGAGACAGAGACACAAGTAATACCTGTCACTGACTTTGCTGAGTTACAGATACAATCACAAAGCTCTCAGCATCAGACTAATGCAAGCACAGTTGCAACTGGATCACTTCGAAGTCTCATTTCCTCATCTGATAAACTTGTTTGGGGGCGATTGGGCCCCAGGACTCAGACCAGTACCAATGCTAGGCATGCTGCTGCTAGGAGGGCCAATCGCTTGGAGAGATTCATTCATCATCTGCAAAACTCAAATCAGAATGATGATGAGTTGGACATCTTCATCAAACTCGTCTCTTTTGAGGAAGCAAGAGTGCCAAATTTGCCAAGGCCATACCTTAATTGTAGACCCACTTTATCGATCGACCAACTGTGCCAGTATGTTGCCCATGAAACCCAGCTGCAAACTGAAGAAATTGAACTTTACGTGGTGAAGGGGTGTGGACTTAGCTTTGTGAGTGGTCGTGAAAAATTTGATGCGGACAAATATGAAACTCAATTTCTTGGGAGAGGAGATCAAAAGTTGGCTGAAATCATAACAAACAATCTCAGCCTTGGCCATCTGGTCATAGCTTACAAGAGGAAGCAGTGGAACTTGAATGAAGTGTTCTCCTGCCCTGGTTCGGAATATGATGAGTTTCTTACCTAA 1200 0.435 MNKRNKQKFRQDAPTGLTSQSESEDDDEVWYPFDLEALRKDVECPICLGIIRNARVVMECMHRFCKECIEKSFRLGNNECPTCRTHCSSRRSLREDRLFDELISVIYPNIDEYEEKEMTLSNDAKNNIKSMQEAYGKTLERQNEAAGKKGAAAATSRSSRTATLRRSARNAESNSSRDITLPPIAEETETQVIPVTDFAELQIQSQSSQHQTNASTVATGSLRSLISSSDKLVWGRLGPRTQTSTNARHAAARRANRLERFIHHLQNSNQNDDELDIFIKLVSFEEARVPNLPRPYLNCRPTLSIDQLCQYVAHETQLQTEEIELYVVKGCGLSFVSGREKFDADKYETQFLGRGDQKLAEIITNNLSLGHLVIAYKRKQWNLNEVFSCPGSEYDEFLT 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01737 399 PANTHER OS11G0578200 PROTEIN 18 177 IPR044592 -
Viun5g01737 399 MobiDBLite consensus disorder prediction 141 185 - -
Viun5g01737 399 ProSiteProfiles Zinc finger RING-type profile. 44 84 IPR001841 -
Viun5g01737 399 CDD RING-HC_RING1-like 41 106 - -
Viun5g01737 399 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Viun5g01737 399 SUPERFAMILY RING/U-box 35 115 - -
Viun5g01737 399 Pfam Zinc finger, C3HC4 type (RING finger) 43 83 - -
Viun5g01737 399 SMART ring_2 44 83 IPR001841 -
Viun5g01737 399 MobiDBLite consensus disorder prediction 154 181 - -
Viun5g01737 399 MobiDBLite consensus disorder prediction 1 25 - -
Viun5g01737 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01737 Viun-Chr5 15453704 15460377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01737 44 108 C3H Transcription Factor Family AT2G30580 32.353 1.84e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01737 K10695 - gmx:102666848 436.417