Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01734 ATGTCAGCTTCGGATAGCAGCCGAGCCCGTGTGCTAACCGGCTTGACCCTAGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCCACGCCGCCCAGGGAACCACAGCCCAAGAACCGAACCCTACTTGACATCATCAAAGACGACGAATCCAACAAAAAGGATCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTAGGCTAAAGCGCGCAGGGTCTGCTTGGATATCGACAATTCATATCCCTACTTCGGATGTCCCTATTCCTAACCCGAATAGTAGAATCTTTACGCAGCTTGGTCGCCGTAACTCGGTCCGATTCCCCACTCAGGCGCTGACTGAGACTCCGGCTAACTCCGAATCGGACATCTCATCTCCCTACATGACTCACCAGGTGGAGGACCTCAACCCCGCCACTGAAGACCCCGGTCCTCCGGCCGCCGCAGCTCCGGCAATCCGCCCCTCGTTTAGCCGCCGCGGTTCCACCCGCTTCACCGGCGAAGCCGCCGAGAACAACACCGCCGGAACCCTGCGGCCGCAGCTCTCGTTGCGGAGCTCGGCCAACATGCCGACGGCGGAGCCGTACCGGCGAGGGCGGGTGGTGACTTTCCGCGACAGCTTCGACGAGGAGGATGGGGAGGAGGAGGGGGAGAAGCCGGGGGAGAGGACGCTGTCAGCGAGGGAGGCGGTTGCGGCGCAGGAGGCGTCGGAAGCGGCGGCGCAGGAGGCGGAGGATGAGGAGCAGGCGCCGGTGATGATGTCGCTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTGAGTGATGAGGAGGATTTTGATGAGGATGCAGATGATGAAGATGGAGGAGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCAGGCATAAAGCTGCTTCTTCTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGTAAGGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGAGATTTTTTAA 1041 0.5677 MSASDSSRARVLTGLTLDDVLANQKRPSSTPPREPQPKNRTLLDIIKDDESNKKDRRSWKAFKDKLRLKRAGSAWISTIHIPTSDVPIPNPNSRIFTQLGRRNSVRFPTQALTETPANSESDISSPYMTHQVEDLNPATEDPGPPAAAAPAIRPSFSRRGSTRFTGEAAENNTAGTLRPQLSLRSSANMPTAEPYRRGRVVTFRDSFDEEDGEEEGEKPGERTLSAREAVAAQEASEAAAQEAEDEEQAPVMMSLMDLLEETDREMGLEGSRYILSDEEDFDEDADDEDGGGSMEHTCCICMVRHKAASSIPCGHTFCRMCSRELMVSKGNCPLCNNFILEILEIF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01734 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 346 IPR013083 -
Viun5g01734 346 MobiDBLite consensus disorder prediction 158 189 - -
Viun5g01734 346 SMART ring_2 298 335 IPR001841 -
Viun5g01734 346 MobiDBLite consensus disorder prediction 15 41 - -
Viun5g01734 346 CDD RING-HC 297 335 - -
Viun5g01734 346 Pfam Zinc finger, C3HC4 type (RING finger) 295 339 - -
Viun5g01734 346 SUPERFAMILY RING/U-box 297 342 - -
Viun5g01734 346 ProSiteProfiles Zinc finger RING-type profile. 298 336 IPR001841 -
Viun5g01734 346 PANTHER OS01G0917900 PROTEIN 9 346 - -
Viun5g01734 346 MobiDBLite consensus disorder prediction 134 248 - -
Viun5g01734 346 Coils Coil 226 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01734 Viun-Chr5 15392465 15394224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01734 7 346 C3H Transcription Factor Family AT3G07120 33.420 3.28e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01734 - - var:108328735 529.25