Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01723 ATGTGGAGGAGGAGTTACTGTCGGCCAACTAAAATATGGTCCTCAATCAAGTCAGCAATGAAAAGAGGCAAGAAAGGTTTCTTATGTTTCAAGAATGATGAACCATTAGAACAAACAGGCAACAAAGTATTTGAACAACTGTCACGAGTTAAACTACAGGAGCTGCTCCTGTTTGATTTCGAAAAGCTTGCAAAAGCCACAAACAACTTCCACCAGACAAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTGTACAAGGGGAAACTGCAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTCTAGAAGAATTCATGAACGAAATAGTCGTGATTTCCAAGCTTCAGCACCGCAATCTTGTAAGACTTCTTGGCTGCTGTATTGAAGGTGACGAAAAGATGTTACTGTATGAATACATGCCAAACAAAAGTATGGATGTGCTTATTTTTGATCCAACAAAACATAAACACCTAGATTGGAGGAAGCGCTGCTCTATAATAGAAGGAATAGCTCGAGGTTTGCTTTATCTTCATAGAGACTCCAGACTAAAAATCATACACAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGATGAACTCAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAAGAACTGAAGATCGCGCTAACACTAATAGGATTGTTGGAACATATGGCTACATGTCCCCTGAATATGCAATGCAAGGACTGTTCTCAGAGAAATCGGATGTGTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACTCAAGCTTTTACGATGATGAGCATTCTCTTACCCTTTTAGGATTTACCTGGGCACAGTGGAAAGAAGGCAATACATTATCTTTAATAGATTCAGAAATATATGATCCTAACGATGATGAAGATATGTTAAGGGTCATTCACATAGGACTTTTATGCGTACAAGAACTTGCTTCAGACAGACCCACAATGGCAACAGTAGTTTCTATGCTTAACAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATTCTGGTGCAAAATGTGGTTAATTCAGAGCCGTCTGAAGAAAATCAAAGACTTTGTTCCGTGAATACAATTAGTATTACAGAAATCTATGGTAGGTAG 1167 0.3899 MWRRSYCRPTKIWSSIKSAMKRGKKGFLCFKNDEPLEQTGNKVFEQLSRVKLQELLLFDFEKLAKATNNFHQTNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEIVVISKLQHRNLVRLLGCCIEGDEKMLLYEYMPNKSMDVLIFDPTKHKHLDWRKRCSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDDELNPKISDFGMARIFGRTEDRANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNSSFYDDEHSLTLLGFTWAQWKEGNTLSLIDSEIYDPNDDEDMLRVIHIGLLCVQELASDRPTMATVVSMLNSDVVFLPPPSQPAFILVQNVVNSEPSEENQRLCSVNTISITEIYGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01723 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Viun5g01723 388 CDD STKc_IRAK 76 342 - -
Viun5g01723 388 SUPERFAMILY Protein kinase-like (PK-like) 55 365 IPR011009 -
Viun5g01723 388 Pfam Protein tyrosine and serine/threonine kinase 71 341 IPR001245 GO:0004672|GO:0006468
Viun5g01723 388 Gene3D Phosphorylase Kinase; domain 1 34 145 - -
Viun5g01723 388 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 31 366 - -
Viun5g01723 388 FunFam receptor-like serine/threonine-protein kinase SD1-8 42 145 - -
Viun5g01723 388 Gene3D Transferase(Phosphotransferase) domain 1 146 346 - -
Viun5g01723 388 ProSiteProfiles Protein kinase domain profile. 70 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01723 388 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 146 349 - -
Viun5g01723 388 SMART serkin_6 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01723 Viun-Chr5 15236862 15238615 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01723 56 388 Receptor kinase-like Gene Family AT4G11530 55.752 1.24e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g01723 PK_Tyr_Ser-Thr 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01723 - - gmx:100777856 602.823