Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01720 ATGGATTACACCAACTACAAAAACATGTTCTTCGCTTTCATCATAACATGTTTTCTTTTTTCAGATATTGTTTGTGCCACAGACACCATCACATCATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCTCTGGTGGCAACTACACCTTGGGATTCTTCACCCCTCATAACTCCACAAAACGTTATGTGGGAATTTGGTGGCAACCCAAATTCACTGTCGTATGGGTGGCTAACAGAAACAAACCACTGAATGATTCTTCTGGAGTTGTTACCATATCTAAAGATGGCGACCTTGAGGTGTTGAATGGTCAGAATCATGTAATTTGGTCAACAAATGTGTCAAACGTTGGATCCAACACTACTTCTAAACTCTTGGATTCTGGGAACCTTGTGCTTCGGGAGAACTCATCAGGAACAATTATATGGGAGAGTTTCCAGCATCCCTCAAATGCTTTGTTAACCAATATGAAGATTTCAACTAACAAAGTAACTGGTGAAAAAGTAAAACTAACATCATGGAGAAGCCCTTCTGATCCATCCACTGGTAGCTTTTCTATAAGTGTTGAACGTCTTAGTATACCTGAAGTGTTCATGTGGAATGAAACTCGTCCCTTCTGGCGCACGGGTCAATGGAATAAAAAGATCTTTACTGGGATGCCCTATATGAAAACGTATTATCTGGAAGGGGGACATGTTGGAGATGACGGGGAAGGAAATGTTGAATTCCATTACAAGGGAGTACAAGAGATTGGCTTCACAATCTATATTGTGAATTCAGCGGGCAATTATGAAGAGAGATGGTGGGATGGGGAGAGGAAAGAATGGGTAGTCACATGGAATAGTCATCAATTTGAGTGTGATGTTTATGGTGTGTGTGGACCTTTTGCAGTTTGTAATTCTGAAAGCTCACCTACATGCAGCTGTTTGAAAGGGTTTGAGCCAAGAAACAAAGAGGAATGGAATAGAAAAAACTGGACTAGTGGATGTTTCAGGAGAACACCTCTGCAGTGTGAAAGAGACAGCAACCAAAACAAAAGTGCAGATCATACAGAAGATGGATTTTTGGAAATGAAAATGGTCAAAGTTCCAGATTTTGCAGATGGGTCATCCCTCAGACTTCAACCAGACATGTGCAGAAGCCGATGTTTGGAAAATTGTTCATGCATTGCATACTCATATGATGCTGATATTGGTTGTATGTCTTGGACTGAGAATCTAATTGACATAACACAATTCTCAAACGGAGGACTTGATCTACATGTACGAGTAGCCTACACAGAACTTGCAGAGAAAGAGAGAAACAGGACAATCATCATTATTGTTACAGGGACAGTAGGAACTACCTTAATTCTCATTTGTGCATACATCATGTGGAAAAGGATTTCTACTGGCCACGTAGAGATCATCAAAAGATTCCTTCAGTTTAATGGAGGTGGAGCACCTCAAGAATATATAAATGACAATGCATTTGGTGATCTCTCACAAGTCAAACTCCAGGAGCTTTTAACAATTAGATTTGAAAATCTGGTAACCGCCACAAACAAATTTCACGCATCGAACAAACTAGGAGAGGGTGGTTTTGGTCCGGTCTACAAGGGGCAATTGAACGATGGCAGGGAAATTGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTTTAGAAGAGTTCATGAATGAAGTTGTAGTCATTTCCAAGCTTCAACACCGCAATCTTGTGAGACTTCTTGGTTGTTGTATTGAAGGGGAGGAAAAAATGCTGATTTATGAGTACATGCCAAATAACAGTTTGGACAAATATATCTTTGATCCATCAAAAGATAAGGTTCTTCATTGGAGAAAACGCTTTAGCATAATAGAAGGAGTTGCTCGAGGAATGCTTTATCTTCACAGAGACTCCAGGCTAAAAATCATCCACAGGGACTTGAAGGCAAGTAATATCTTGTTGGATGTGGAGCTAAATCCAAAGATATCTGACTTTGGTATGGCTAGAATCTTTGGTGGGAATGAGGATGAGGCAAACACTAAGAGAATCGTGGGAACATATGGCTATATGTCTCCTGAGTATGCAATGCAAGGACTGTTCTCTGAAAAATCAGATGTGTTCAGTTTTGGGGTTTTGGTACTTGAGATTGTTAGTGGAAGACGAAATTCAAGCTTTTATGATGAAGAAAATTATCTTACCCTTTTAGGATTTGCCTGGATACAGTGGACAGAAGACAACGTTCCCTCACTAATAAATCAAGGAATATATGATCCTAAGCTTCATAAATATTTTTATAGGTGCATACATATAGGACTTCTATGTGTCCAAGAATATGCAGCAGATAGGCCAAATATGGCTACTGTAATTTCTATGCTAAACAGTGAGATTCCGGATCTTCCTCCTCCAAGGAAACCTGCATTCATCCTGAGGGAAAATATGTTAAGTTCACTTTCCTATGTAAGAGGATATGACTTGAACTCCCTCAACTCTATCAGTATTTCGGACATACATGGCAGATAG 2508 0.3979 MDYTNYKNMFFAFIITCFLFSDIVCATDTITSSQFIKDNETITSSGGNYTLGFFTPHNSTKRYVGIWWQPKFTVVWVANRNKPLNDSSGVVTISKDGDLEVLNGQNHVIWSTNVSNVGSNTTSKLLDSGNLVLRENSSGTIIWESFQHPSNALLTNMKISTNKVTGEKVKLTSWRSPSDPSTGSFSISVERLSIPEVFMWNETRPFWRTGQWNKKIFTGMPYMKTYYLEGGHVGDDGEGNVEFHYKGVQEIGFTIYIVNSAGNYEERWWDGERKEWVVTWNSHQFECDVYGVCGPFAVCNSESSPTCSCLKGFEPRNKEEWNRKNWTSGCFRRTPLQCERDSNQNKSADHTEDGFLEMKMVKVPDFADGSSLRLQPDMCRSRCLENCSCIAYSYDADIGCMSWTENLIDITQFSNGGLDLHVRVAYTELAEKERNRTIIIIVTGTVGTTLILICAYIMWKRISTGHVEIIKRFLQFNGGGAPQEYINDNAFGDLSQVKLQELLTIRFENLVTATNKFHASNKLGEGGFGPVYKGQLNDGREIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNNSLDKYIFDPSKDKVLHWRKRFSIIEGVARGMLYLHRDSRLKIIHRDLKASNILLDVELNPKISDFGMARIFGGNEDEANTKRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLVLEIVSGRRNSSFYDEENYLTLLGFAWIQWTEDNVPSLINQGIYDPKLHKYFYRCIHIGLLCVQEYAADRPNMATVISMLNSEIPDLPPPRKPAFILRENMLSSLSYVRGYDLNSLNSISISDIHGR 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01720 835 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Viun5g01720 835 Pfam Protein tyrosine and serine/threonine kinase 519 788 IPR001245 GO:0004672|GO:0006468
Viun5g01720 835 CDD STKc_IRAK 523 789 - -
Viun5g01720 835 Gene3D Phosphorylase Kinase; domain 1 484 592 - -
Viun5g01720 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672|GO:0006468
Viun5g01720 835 SMART ntp_6 350 424 IPR003609 -
Viun5g01720 835 CDD B_lectin 33 149 IPR001480 -
Viun5g01720 835 ProSiteProfiles Protein kinase domain profile. 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01720 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Viun5g01720 835 ProSiteProfiles PAN/Apple domain profile. 338 425 IPR003609 -
Viun5g01720 835 CDD PAN_AP_plant 334 425 - -
Viun5g01720 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 483 592 - -
Viun5g01720 835 Gene3D Transferase(Phosphotransferase) domain 1 593 794 - -
Viun5g01720 835 PIRSF SRK 2 835 IPR024171 GO:0004674
Viun5g01720 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 779 - -
Viun5g01720 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 593 796 - -
Viun5g01720 835 Pfam D-mannose binding lectin 73 175 IPR001480 -
Viun5g01720 835 SUPERFAMILY Protein kinase-like (PK-like) 506 812 IPR011009 -
Viun5g01720 835 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Viun5g01720 835 SMART blect_4 33 149 IPR001480 -
Viun5g01720 835 Gene3D - 21 147 IPR036426 -
Viun5g01720 835 SMART serkin_6 517 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01720 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Viun5g01720 835 Pfam PAN-like domain 350 410 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01720 Viun-Chr5 15194681 15198107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01720 501 806 Receptor kinase-like Gene Family AT4G05200 58.497 3.18e-123 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g01720 PK_Tyr_Ser-Thr 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01720 - - tpra:123892366 1092.8