Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01712 ATGGATTACACGAAGTGCACAAATCTGTTCTTCGTTTTCGTCGTGACATGTTTTCTTTCTTCAGATGCTGTTACTGCCACAGACACTATCTCCTCATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCACTGGTGGCAACTTCACCTTGGGATTCTTCACCCCACAAAATTCTACAAACCGTTATGTGGGAATTTGGTGGCAACCTAAATTCACTGTCATATGGGTAGCTAACAGAAACCAGCCACTGAATGATTCCTCTGGACTTGTTACCATATCTGAAGATGGCAATCTTGTGGTGTTGAATGGTCAGAATCAAGTAATTTGGTCAACAAATGTGTCCAATGTTGGATCCAACACTACTTCCAAACTCTTGGATTCTGGGAACCTTGTGCTTCAGGAGAGCTCATCAGACAGAACTATATGGGAAAGTTTCCAGCATCCTTCAGATGCAATGTTACCCAATATGAAGATTTCAACTAACAAAGTAACGGGTGAGAAAGTAAAACAAACATCATGGAAAAGCCCTTCTGATCCATCCACTGGCAGCTTTTCTTTAAGTGTTGAACGCCTTAGTATACCTGAAGTGTTCATCTGGAATGAAACTCGTCCCTTCTGGCGCACTGGTCCATGGAACAGTAAGATCTTTACAGGACTGCCCTATATGAAAACGTATTATCTTGAAGGGATACATATTGGAGATGACGGGGAAGGAAATGTTGAATTCCTTTACAAGGAAGTAGAAGAGGTTGGCTTCATAATCTATATTTTGAATTCAACAGGAAATTGTGAAGAAAGATGGTGGAATGGAGAGAGGAAAGAATGGGTAGTCACATGGAATAGTCATCAATTTGAGTGTGATGTTTACGGTGTATGTGGACCTTTTGCAGTTTGTAATTCTGAAAGCGCCCCAACATGCAGCTGTTTGAAAGGGTTTGAGCCAAAAAACAAAGAGGAATGGAATAGAAAAAACTGGACTAGTGGATGTTTCAGGAGAACACCTCTGCAGTGTGAAAGAGCCAGCAACCAAAACAAAAGTGCAGATAATACAGAAGATGGATTTTTGGAAATGAAAATGGTCAAAGTTCCAGATTTTGCAGATGGGTCATCCCTCAGACTTCAACCAGACATGTGCAGAAGCCGATGTTTGGAAAATTGTTCATGCATTGCATACTCATATGATGCTGATATTGGTTGTATGTCTTGGACTGAGAATCTAATTGACATAACACAATTCTCAAACGGAGGACTTGATTTACATGTACGAGTAGCCTACACAGAACTTGAGAAAGAGAGAAACAACAAAATCATCATTATCGTTTCAGTGACAGTAGGAAGTACCTTAGTTCTCATTTGTGCATATATGATGTGGAGAACGATTTCTACTCGCCACGAGATCATCAAAAGATTACTCCAGTTTAATGGAGGTGGAGCACCTGCAGAATATACAAATGACAATGCATTTTGTGATCTGTCACAAGTCAAACTCCAGGAGCTATTAACATTTACTATTGAAAAGCTTGTAACCGCCACAAACAAATTTCACCCTTCGAACAAACTAGGACAGGGTGGTTTTGGTCCGGTCTATAAGGGGCAATTGCACGATGGGAGGGAAATTGCAGTTAAAAGACTTTCCAGAGCATCTGGGCAAGGTCTAGAAGAGTTCATGAATGAAGTAGTAGTCATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGTTGTTGTGTTGAAGGGGAGGAAAAGATGTTGATTTATGAGTACATGCCAAATAAAAGTTTGGACAAATACATCTTTGATCCATCAAAAGATAAGGTTCTTCATTGGAGAAAACGGTTTAGCATAATAGAAGGAGTTGCTCGAGGAATGCTTTATCTTCACAGAGATTCCAGGCTAAAAATCATCCACAGGGACTTGAAGGCAAGTAATATCTTGCTGGATGTAGAGCTAAATCCAAAAATATCTGACTTTGGTATGGCTAGAATCTTTGGTGGGAATGAGGATGAGGCAAATACTAAAAGAATTGTTGGAACATATGGCTATATGTCTCCTGAGTATGCAATGCAAGGACTGTTCTCTGAAAAATCAGATGTCTTTAGTTTTGGGGTTTTGCTACTTGAGATTATTAGTGGAAGACGAAATTCAAGCTTTTATGATGAAGAAAATTGTCTTACCCTTTCAGGATTTGCCTGGATACAGTGGACAGAGGACAACATTCCCTCCCTAATAGATCCAGGAATATATGATCCTAACCTTCGTAAATATTTTTATAGGTGCATACACATAGGACTTCTATGTGTCCAAGAATTTGCAGCAGATAGGCCTACTATGGCTACTGTAATTTCTATGCTAAACAGTGAGATTGCAGATCTTCCTCCTCCAAGGAAGCCTGCATTCATCCTGAGGGAATATATGTTAAGTTCACTTTCCTCTGTAAGAGAAAATGACTTAAACTCCCTCAACATTGTCAGTATTTCAGACATACAAGGCAGATAG 2502 0.3981 MDYTKCTNLFFVFVVTCFLSSDAVTATDTISSSQFIKDNETITSTGGNFTLGFFTPQNSTNRYVGIWWQPKFTVIWVANRNQPLNDSSGLVTISEDGNLVVLNGQNQVIWSTNVSNVGSNTTSKLLDSGNLVLQESSSDRTIWESFQHPSDAMLPNMKISTNKVTGEKVKQTSWKSPSDPSTGSFSLSVERLSIPEVFIWNETRPFWRTGPWNSKIFTGLPYMKTYYLEGIHIGDDGEGNVEFLYKEVEEVGFIIYILNSTGNCEERWWNGERKEWVVTWNSHQFECDVYGVCGPFAVCNSESAPTCSCLKGFEPKNKEEWNRKNWTSGCFRRTPLQCERASNQNKSADNTEDGFLEMKMVKVPDFADGSSLRLQPDMCRSRCLENCSCIAYSYDADIGCMSWTENLIDITQFSNGGLDLHVRVAYTELEKERNNKIIIIVSVTVGSTLVLICAYMMWRTISTRHEIIKRLLQFNGGGAPAEYTNDNAFCDLSQVKLQELLTFTIEKLVTATNKFHPSNKLGQGGFGPVYKGQLHDGREIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLLGCCVEGEEKMLIYEYMPNKSLDKYIFDPSKDKVLHWRKRFSIIEGVARGMLYLHRDSRLKIIHRDLKASNILLDVELNPKISDFGMARIFGGNEDEANTKRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIISGRRNSSFYDEENCLTLSGFAWIQWTEDNIPSLIDPGIYDPNLRKYFYRCIHIGLLCVQEFAADRPTMATVISMLNSEIADLPPPRKPAFILREYMLSSLSSVRENDLNSLNIVSISDIQGR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01712 833 Gene3D - 21 147 IPR036426 -
Viun5g01712 833 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Viun5g01712 833 PIRSF SRK 2 833 IPR024171 GO:0004674
Viun5g01712 833 Pfam D-mannose binding lectin 73 175 IPR001480 -
Viun5g01712 833 Gene3D Phosphorylase Kinase; domain 1 481 590 - -
Viun5g01712 833 SMART ntp_6 350 424 IPR003609 -
Viun5g01712 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 481 590 - -
Viun5g01712 833 Pfam S-locus glycoprotein domain 207 317 IPR000858 GO:0048544
Viun5g01712 833 SMART blect_4 33 149 IPR001480 -
Viun5g01712 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Viun5g01712 833 Pfam PAN-like domain 350 410 IPR003609 -
Viun5g01712 833 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 777 - -
Viun5g01712 833 Gene3D Transferase(Phosphotransferase) domain 1 591 793 - -
Viun5g01712 833 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Viun5g01712 833 SMART serkin_6 515 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01712 833 ProSiteProfiles PAN/Apple domain profile. 338 425 IPR003609 -
Viun5g01712 833 ProSiteProfiles Protein kinase domain profile. 515 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01712 833 Pfam Protein tyrosine and serine/threonine kinase 518 785 IPR001245 GO:0004672|GO:0006468
Viun5g01712 833 CDD B_lectin 33 149 IPR001480 -
Viun5g01712 833 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 591 794 - -
Viun5g01712 833 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Viun5g01712 833 CDD PAN_AP_plant 334 425 - -
Viun5g01712 833 CDD STKc_IRAK 521 787 - -
Viun5g01712 833 SUPERFAMILY Protein kinase-like (PK-like) 500 816 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01712 Viun-Chr5 15146434 15152557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01712 427 804 Receptor kinase-like Gene Family AT4G05200 51.323 1.26e-124 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun5g01712 PK_Tyr_Ser-Thr 7.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01712 - - gsj:114424251 1114.75