Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01693 ATGGAGAACAACGCACTCAGAGATCGAATCTTTGCGGACAATGAACACGAAGAAATCCCTGATTCATTCGTATGCTGCGTTTGTCTGGATCTATTATACAAACCCATTGTGCTATCATGTGGCCATATATGCTGTTTCTGGTGTGTCTATAATTCCATGAATTGTCTGCGCGAGTCTCAATGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTCCTTAAGATTTATACTGTTCCTTACAAGAGAAGGGAAGAGCAAACGCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGAGACATGTGAATCACAAGCTAAATTTGGTCATTCTGGGTCCACCACCCATGAAAGAGACGAAGGAACAGTCTATTCTAATGGAGAGCCTGATATTGTTGGAACTCCTGCTAAAAGAAAAAAATTGCCTCAGGAAGATATTTCTCTCGAACAGAAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTGCTCTTTCGTCCTGTAGTTCTTAATTGTGGCCATGTATACTGTCAAACTTGCGTTGTCAACACAGATGAGGACATGCTCAGATGCCAAGTTTGTCAAAGTCCACATCCCAATAGGTCTCCAAAAGTATGTTTGGAGTTAGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAACTAAAGCAGATCAAAGTCAAACTTGAGACTCCTTCTTGTTCATTGGATAAGGGTAACAAAGGAGAAAATACAGATTGGTGGTCAGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGTGCTGATTGTACGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCATCTCGTTCCAAACTCCCCGGTCGATTCAACCAACAACACACCTCAGAGCACAAGTTCAAGCTTGAACAATCCAACATTATTCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGAGACACTTCTATTGACCTGGAGTCTGTAGGAAACTTAGAGATTGCCTCAGACAGCCCCACAATGTTTGATGATGGAGAAGATAACCACAGTGATTCTGAAACCACCAATTGA 1182 0.4129 MENNALRDRIFADNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQMLHFLLLKIYTVPYKRREEQTLEEEKKSGFYSPQFDPETCESQAKFGHSGSTTHERDEGTVYSNGEPDIVGTPAKRKKLPQEDISLEQKLSVADVTCTMCKQLLFRPVVLNCGHVYCQTCVVNTDEDMLRCQVCQSPHPNRSPKVCLELDHFLEEQFPEEYRQRRDAIELKQIKVKLETPSCSLDKGNKGENTDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYASRSKLPGRFNQQHTSEHKFKLEQSNIIHNIMLRLATAQLGDTSIDLESVGNLEIASDSPTMFDDGEDNHSDSETTN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01693 393 MobiDBLite consensus disorder prediction 373 393 - -
Viun5g01693 393 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Viun5g01693 393 MobiDBLite consensus disorder prediction 379 393 - -
Viun5g01693 393 ProSitePatterns Zinc finger RING-type signature. 188 197 IPR017907 -
Viun5g01693 393 Gene3D - 273 339 IPR043145 -
Viun5g01693 393 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Viun5g01693 393 SUPERFAMILY RING/U-box 168 231 - -
Viun5g01693 393 SUPERFAMILY RING/U-box 276 337 - -
Viun5g01693 393 SMART ring_2 173 210 IPR001841 -
Viun5g01693 393 SMART ring_2 25 64 IPR001841 -
Viun5g01693 393 Pfam Zinc finger, ZZ type 281 320 IPR000433 GO:0008270
Viun5g01693 393 FunFam E3 ubiquitin-protein ligase PRT1 160 255 - -
Viun5g01693 393 FunFam E3 ubiquitin-protein ligase PRT1 274 339 - -
Viun5g01693 393 SUPERFAMILY RING/U-box 10 75 - -
Viun5g01693 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 132 IPR013083 -
Viun5g01693 393 MobiDBLite consensus disorder prediction 117 152 - -
Viun5g01693 393 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Viun5g01693 393 Pfam RING-type zinc-finger 173 207 IPR027370 -
Viun5g01693 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 258 IPR013083 -
Viun5g01693 393 ProSiteProfiles Zinc finger ZZ-type profile. 280 344 IPR000433 GO:0008270
Viun5g01693 393 PANTHER UNCHARACTERIZED 16 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01693 Viun-Chr5 14810135 14822342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01693 23 67 C3H Transcription Factor Family AT2G42030 40.000 4.90e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01693 - - gmx:100782681 714.146