Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01692 ATGGAGAACAACGCACTCAGAGATCGAATCTTTGCGGACAATGAACACGAAGAAATCCCTGATTCATTCGTATGCTGCGTTTGTCTGGATCTATTATACAAACCCATTGTGCTATCATGTGGCCATATATGCTGTTTCTGGTGTGTCTATAATTCCATGAATTGTCTGCGCGAGTCTCAATGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAAATGCTTCACTTTTTGCTCCTTAAGATTTATACTGTTCCTTACAAGAGAAGGGAAGAGCAAACGCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGAGACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCTCCTCTATTATGAATTTGACATCCAACTCATGTAATGTGGGAACTTCTGAATGTATGGAGCAATCAGGGTCCACCACCCATGAAAGAGACGAAGGAACAGTCTATTCTAATGGAGAGCCTGATATTGTTGGAACTCCTGCTAAAAGAAAAAAATTGCCTCAGGAAGATATTTCTCTCGAACAGAAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAACTGCTCTTTCGTCCTGTAGTTCTTAATTGTGGCCATGTATACTGTCAAACTTGCGTTGTCAACACAGATGAGGACATGCTCAGATGCCAAGTTTGTCAAAGTCCACATCCCAATAGGTCTCCAAAAGTATGTTTGGAGTTAGATCACTTTTTGGAGGAACAATTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAACTAAAGCAGATCAAAGTCAAACTTGAGACTCCTTCTTGTTCATTGGATAAGGGTAACAAAGGAGAAAATACAGATTGGTGGTCAGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGTGCTGATTGTACGGAGAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCATCTCGTTCCAAACTCCCCGGTCGATTCAACCAACAACACACCTCAGAGCACAAGTTCAAGCTTGAACAATCCAACATTATTCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGAGACACTTCTATTGACCTGGAGTCTGTAGGAAACTTAGAGATTGCCTCAGACAGCCCCACAATGTTTGATGATGGAGAAGATAACCACAGTGATTCTGAAACCACCAATTGA 1263 0.4117 MENNALRDRIFADNEHEEIPDSFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQMLHFLLLKIYTVPYKRREEQTLEEEKKSGFYSPQFDPETCESQAKFGHSGIPSSSSIMNLTSNSCNVGTSECMEQSGSTTHERDEGTVYSNGEPDIVGTPAKRKKLPQEDISLEQKLSVADVTCTMCKQLLFRPVVLNCGHVYCQTCVVNTDEDMLRCQVCQSPHPNRSPKVCLELDHFLEEQFPEEYRQRRDAIELKQIKVKLETPSCSLDKGNKGENTDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYASRSKLPGRFNQQHTSEHKFKLEQSNIIHNIMLRLATAQLGDTSIDLESVGNLEIASDSPTMFDDGEDNHSDSETTN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01692 420 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Viun5g01692 420 SUPERFAMILY RING/U-box 303 364 - -
Viun5g01692 420 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Viun5g01692 420 FunFam E3 ubiquitin-protein ligase PRT1 301 366 - -
Viun5g01692 420 SUPERFAMILY RING/U-box 195 258 - -
Viun5g01692 420 SUPERFAMILY RING/U-box 10 75 - -
Viun5g01692 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 112 IPR013083 -
Viun5g01692 420 Pfam Zinc finger, ZZ type 308 347 IPR000433 GO:0008270
Viun5g01692 420 Pfam RING-type zinc-finger 200 234 IPR027370 -
Viun5g01692 420 MobiDBLite consensus disorder prediction 150 179 - -
Viun5g01692 420 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Viun5g01692 420 FunFam E3 ubiquitin-protein ligase PRT1 187 282 - -
Viun5g01692 420 FunFam E3 ubiquitin-protein ligase PRT1 16 111 - -
Viun5g01692 420 Gene3D - 300 366 IPR043145 -
Viun5g01692 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 285 IPR013083 -
Viun5g01692 420 ProSiteProfiles Zinc finger ZZ-type profile. 307 371 IPR000433 GO:0008270
Viun5g01692 420 MobiDBLite consensus disorder prediction 406 420 - -
Viun5g01692 420 PANTHER UNCHARACTERIZED 16 384 - -
Viun5g01692 420 SMART ring_2 200 237 IPR001841 -
Viun5g01692 420 SMART ring_2 25 64 IPR001841 -
Viun5g01692 420 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01692 Viun-Chr5 14810135 14822342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01692 23 67 C3H Transcription Factor Family AT2G42030 40.000 4.39e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01692 - - gmx:100782681 776.548