Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01691 ATGAAGTCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAGTTGCATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAGGTTGCCACAGATCCAGTAGCTATTGATGCACCTGGAGGATTCCTTTACGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACACAACAAACAAAAGTTAGAGAACAACAACAACTTCAAATACAGCAGATGCAACTAATGCAGCAACGCAATGCACAATTGCAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAATTCTGAAGGAATGTTGGGACAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACACCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCCAGGCCAACTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCACCAAATTCCTGGGCGAACTCCTTTGACCACTGACATAAAAGCAGAAGTTAACTTAGGTGCCCCACCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCAGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTCATGTCATCACAACAGCAACAGGTCTTGACTCAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTAACAGGAATGATGGATCTATTTGCTCGCAAATGCAGTCTGATTCACCTAAGATGAAGATGGCTCAGTCACAACATTCATTATCTCAACAACAGGAGCAGTTACAGCAGCATCAACTGCAGCAGAATAACAGAAAAAGAAAACAGCACTCTGGAGCTGCCAATAGCACTGGTACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCGTGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCTTCCAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTGTCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCAGCTGAGCAACATAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAAGTTAGTAGCATAAGATCGAGGAATAGCAAAGTTACTTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAACATGGACACTTTTAAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTATAGACCAAATTCACTTCAGGTGGCAACTGCCTCAATGGATAAATCTGTGCGGTTATGGGACACAACAAATCCTAACCGCTGTGTACAAGAATATAGTGGGCACTCTTCAGCTATAGTGTCTCTTGATTTCCATCCTAAGAAGACTGAACTCTTCTGCTACTGCGACGGAGAAAATGAAATTCGGTTTTGGAATATTAATTCTTCCAACTGCTTTCGAGCAACTAAGGGAGTTTATTCACGAGTGAGGTTTCAACCTAGACTGGGGCATTTACTAGCAGCAGGTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACAAAAATCTACTCCCTGCAGGGTCATCCTGAACCAGTGAGCTATATTTGCTGGGATGGAAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCATTCAGGAGATCAGCTCTACTGGAAGCCCGTTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGACATGCGTGCTTAGAGTTATGGAACATGAGTGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATTTCTTGCATGGGTCAGTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTTTGACAATTATGTAAAGGTGTGGAAATAA 2346 0.419 MKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKVREQQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSINAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLIDANRMALLKSAASHPGQLVHGNSGNMSTALHQIPGRTPLTTDIKAEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSNRNDGSICSQMQSDSPKMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSVMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQHKESSKGFTFAEVSSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWNMDTFKTENSPAEHKAVITDVRYRPNSLQVATASMDKSVRLWDTTNPNRCVQEYSGHSSAIVSLDFHPKKTELFCYCDGENEIRFWNINSSNCFRATKGVYSRVRFQPRLGHLLAAGSDKGVSIFDVESDTKIYSLQGHPEPVSYICWDGNGEALASVSLNMVKIWSLNSGECIQEISSTGSPFHSCVFHPSYSTLLVIGGHACLELWNMSENKSMTIPAHENVISCMGQSSVTGMVASASFDNYVKVWK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01691 781 Coils Coil 350 377 - -
Viun5g01691 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Viun5g01691 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 781 - -
Viun5g01691 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Viun5g01691 781 MobiDBLite consensus disorder prediction 301 414 - -
Viun5g01691 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Viun5g01691 781 SMART Lish 14 46 IPR006594 GO:0005515
Viun5g01691 781 SMART WD40_4 535 574 IPR001680 GO:0005515
Viun5g01691 781 SMART WD40_4 493 532 IPR001680 GO:0005515
Viun5g01691 781 SMART WD40_4 701 740 IPR001680 GO:0005515
Viun5g01691 781 SMART WD40_4 660 698 IPR001680 GO:0005515
Viun5g01691 781 SMART WD40_4 742 781 IPR001680 GO:0005515
Viun5g01691 781 SMART WD40_4 621 657 IPR001680 GO:0005515
Viun5g01691 781 SMART WD40_4 578 618 IPR001680 GO:0005515
Viun5g01691 781 Pfam WD domain, G-beta repeat 580 618 IPR001680 GO:0005515
Viun5g01691 781 Pfam WD domain, G-beta repeat 544 574 IPR001680 GO:0005515
Viun5g01691 781 Pfam WD domain, G-beta repeat 505 532 IPR001680 GO:0005515
Viun5g01691 781 Gene3D - 630 781 IPR015943 GO:0005515
Viun5g01691 781 Pfam LisH 16 41 IPR006594 GO:0005515
Viun5g01691 781 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Viun5g01691 781 Gene3D - 478 629 IPR015943 GO:0005515
Viun5g01691 781 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 781 IPR044716 GO:0003714
Viun5g01691 781 MobiDBLite consensus disorder prediction 323 414 - -
Viun5g01691 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
Viun5g01691 781 CDD WD40 496 781 - -
Viun5g01691 781 SUPERFAMILY WD40 repeat-like 495 781 IPR036322 GO:0005515
Viun5g01691 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 574 IPR001680 GO:0005515
Viun5g01691 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Viun5g01691 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 627 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01691 Viun-Chr5 14773824 14782040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01691 582 780 Miscellaneous Gene Families AT5G08390 24.390 9.71e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun5g01691 WD40 0.0057 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01691 - - gmx:100786946 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01691 5 14773824 14782040 Viun5g01691 5 14773824 14782040 ECH