Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01689 ATGAAGTCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAGTTGCATGCCACTGCAAAAGCTTTTGTCGCAGAAGGAAAGGTTGCCACAGATCCAGTAGCTATTGATGCACCTGGAGGATTCCTTTACGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACACAACAAACAAAAGTTAGAGAACAACAACAACTTCAAATACAGCAGATGCAACTAATGCAGCAACGCAATGCACAATTGCAGCGAAGAGATCCTAATCATCCTGCTCTTGGTAGTTCCATAAATGCTATGAATTCTGAAGGAATGTTGGGACAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACACCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCCAGGCCAACTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCACCAAATTCCTGGGCGAACTCCTTTGACCACTGACATAAAAGCAGAAGTTAACTTAGGTGCCCCACCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCAGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCGAAGCCCAATTTGACAACCCAGAACCAATTTGTCATGTCATCACAACAGCAACAGGTCTTGACTCAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTAACAGGAATGATGGATCTATTTGCTCGCAAATGCAGTCTGATTCACCTAAGCAGATGAAGATGGCTCAGTCACAACATTCATTATCTCAACAACAGGAGCAGTTACAGCAGCATCAACTGCAGCAGAATAACAGAAAAAGAAAACAGCACTCTGGAGCTGCCAATAGCACTGGTACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCGTGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCTTCCAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTGTCAAATGATGGTGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCAGCTGAGCAACATAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAAGTTAGTAGCATAAGATCGAGGAATAGCAAAGTTACTTGCTGTCACTTTTCTTCAGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAACATGGACACTTTTAAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTATAGACCAAATTCACTTCAGGTGGCAACTGCCTCAATGGATAAATCTGTGCGGTTATGGGACACAACAAATCCTAACCGCTGTGTACAAGAATATAGTGGGCACTCTTCAGCTATAGTGTCTCTTGATTTCCATCCTAAGAAGACTGAACTCTTCTGCTACTGCGACGGAGAAAATGAAATTCGGTTTTGGAATATTAATTCTTCCAACTGCTTTCGAGCAACTAAGGGAGTTTATTCACGAGTGAGGTTTCAACCTAGACTGGGGCATTTACTAGCAGCAGGTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACAAAAATCTACTCCCTGCAGGGTCATCCTGAACCAGTGAGCTATATTTGCTGGGATGGAAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCATTCAGGAGATCAGCTCTACTGGAAGCCCGTTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGACATGCGTGCTTAGAGTTATGGAACATGAGTGAGAACAAAAGCATGACAATTCCTGCACATGAAAATGTAATTTCTTGCATGGGTCAGTCTTCTGTCACTGGAATGGTTGCATCTGCAAGTTTTGACAATTATGTAAAGGTGTGGAAATAA 2349 0.4193 MKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKVREQQQLQIQQMQLMQQRNAQLQRRDPNHPALGSSINAMNSEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLIDANRMALLKSAASHPGQLVHGNSGNMSTALHQIPGRTPLTTDIKAEVNLGAPPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTQNQFVMSSQQQQVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSNRNDGSICSQMQSDSPKQMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSVMMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQHKESSKGFTFAEVSSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWNMDTFKTENSPAEHKAVITDVRYRPNSLQVATASMDKSVRLWDTTNPNRCVQEYSGHSSAIVSLDFHPKKTELFCYCDGENEIRFWNINSSNCFRATKGVYSRVRFQPRLGHLLAAGSDKGVSIFDVESDTKIYSLQGHPEPVSYICWDGNGEALASVSLNMVKIWSLNSGECIQEISSTGSPFHSCVFHPSYSTLLVIGGHACLELWNMSENKSMTIPAHENVISCMGQSSVTGMVASASFDNYVKVWK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01689 782 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Viun5g01689 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Viun5g01689 782 Pfam WD domain, G-beta repeat 581 619 IPR001680 GO:0005515
Viun5g01689 782 Pfam WD domain, G-beta repeat 506 533 IPR001680 GO:0005515
Viun5g01689 782 Pfam WD domain, G-beta repeat 545 575 IPR001680 GO:0005515
Viun5g01689 782 CDD WD40 497 782 - -
Viun5g01689 782 SMART WD40_4 536 575 IPR001680 GO:0005515
Viun5g01689 782 SMART WD40_4 494 533 IPR001680 GO:0005515
Viun5g01689 782 SMART WD40_4 743 782 IPR001680 GO:0005515
Viun5g01689 782 SMART WD40_4 661 699 IPR001680 GO:0005515
Viun5g01689 782 SMART WD40_4 702 741 IPR001680 GO:0005515
Viun5g01689 782 SMART WD40_4 622 658 IPR001680 GO:0005515
Viun5g01689 782 SMART WD40_4 579 619 IPR001680 GO:0005515
Viun5g01689 782 SUPERFAMILY WD40 repeat-like 496 782 IPR036322 GO:0005515
Viun5g01689 782 MobiDBLite consensus disorder prediction 323 415 - -
Viun5g01689 782 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Viun5g01689 782 SMART Lish 14 46 IPR006594 GO:0005515
Viun5g01689 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Viun5g01689 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Viun5g01689 782 Pfam LisH 16 41 IPR006594 GO:0005515
Viun5g01689 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 782 IPR001680 GO:0005515
Viun5g01689 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Viun5g01689 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 536 - -
Viun5g01689 782 Coils Coil 351 378 - -
Viun5g01689 782 Gene3D - 631 782 IPR015943 GO:0005515
Viun5g01689 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Viun5g01689 782 MobiDBLite consensus disorder prediction 301 415 - -
Viun5g01689 782 Gene3D - 479 630 IPR015943 GO:0005515
Viun5g01689 782 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 782 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01689 Viun-Chr5 14773824 14782040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01689 583 781 Miscellaneous Gene Families AT5G08390 24.390 9.99e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun5g01689 WD40 0.0057 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01689 - - gmx:100799686 1290.4