Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01648 ATGCATACAATTTCTGACGTGTATTATAGTCCTCTTTCAGTTGCTGTGGGTTTCAGTTATAGAGAGATGGAAGAGATGCGGAAGGTAACTAATGGTGGAGAAAGCCAAAGTGAAGATGCATCCAGAGTTTTTCCCTGCCTATTCTGTTCAAGAAAGTTTCACAGTTCTCAAGCTCTAGGAGGACACCAAAATGCTCACAAAAAAGAAAGAACAGCTGCAAGGAAAGCCAAGAGGGTTTCTGTGTACTCAAGTGTTTGCTTCCCTTCCCCATTGCCAGCCCCTATGATTTTTGCACCAACCCATCTAGACATTTTAAATACTTCAATGATCATCACTGCCCATGCAGCAGAACTCTCCTATCTCCAAAACCATCAAATTTCCAAACAATTTGGATCAAATGGCGCACCTAGACTTGGCAACACACTGTTTTATGGGGGAACTAAGAGGTTACATGGTGATGGAAAGAACTACAATGTCAGTTGGGGGGACACATCTCAATCCAAATTATTTATAAGTAACGATCAAGATCTTGGAATTTGGAATAATGGTACCGAGAAGAAACAAAAGCTTGATTTATCTCTCCATTTGTAG 591 0.4078 MHTISDVYYSPLSVAVGFSYREMEEMRKVTNGGESQSEDASRVFPCLFCSRKFHSSQALGGHQNAHKKERTAARKAKRVSVYSSVCFPSPLPAPMIFAPTHLDILNTSMIITAHAAELSYLQNHQISKQFGSNGAPRLGNTLFYGGTKRLHGDGKNYNVSWGDTSQSKLFISNDQDLGIWNNGTEKKQKLDLSLHL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01648 196 PANTHER ZINC FINGER PROTEIN JAGGED 33 196 IPR045320 GO:0003700
Viun5g01648 196 SUPERFAMILY beta-beta-alpha zinc fingers 42 71 IPR036236 -
Viun5g01648 196 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Viun5g01648 196 Gene3D Classic Zinc Finger 21 86 - -
Viun5g01648 196 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01648 Viun-Chr5 14188001 14188723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01648 22 196 C2H2 Transcription Factor Family AT5G48890 39.444 8.18e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01648 - - vra:106759055 326.635