Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01647 ATGGTGGTTATAGAGCAGGAAGAGAGCGAGCAACGAAATGCGAGTCCCTCCAACGCCGCCGGCGCTGCCAACGACGCTTCCGATGGCTTCGAAACGGCCAGCGAGGCTGATCTCGCCAGTGATGATGACGGTGGAGATGGTGGAGCAGCCAGACAACAGGAGCAGAAACACCCCGAGGAACACCAACGGCAGCAGCAGACTGAGCAACAACCTGAACACAATGTTCCTCAGAGCACCACTGAATCCTCGGAGAATGCCTTGATCACTGAAGAGTCCCCCGAGAAGGCCTTGATCACTGAAGAGTCCCCCGAGAATGCCTTGATCAACGAAGAGGAATCGAGACAGAAAGCATTGGATCATGCAAATGAAGCAAAGTTAGAAGGCAACAAGCTTTTTGTAGATGGGAAGTATGAAGAGGCGTTATCACAGTATGAAGTTGCTCTACAAGTAGCACCAGACACACCTTCATCTGTGGACATACGGTCAATATGCCATTCGAACCGTGGTGTGTGCTTTCTGAAATTGGGAAAATATGATGACACAATTAAGGAATGCACAAAAGCATTAGAACTGAATCCTGTGTACGTTAAGGCTTTTGTGAGAAGAGGAGAAGCTCATGAAAAGCTCGAGCATTTTGAAGAGGCTATTGCTGATATGAAAAAGATCTTGGAAATTGATCCCTCAAATGATCAAGCTAGGAAAACTATTCGACGCCTAGAGCCACTTGCTGCAGAAAAACGGGAAAAAATGAAGGAGGAAATGATTGCAAAACTGAAAGATATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGTGTGGACAACTTTAAAGCTGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGGTAA 882 0.4694 MVVIEQEESEQRNASPSNAAGAANDASDGFETASEADLASDDDGGDGGAARQQEQKHPEEHQRQQQTEQQPEHNVPQSTTESSENALITEESPEKALITEESPENALINEEESRQKALDHANEAKLEGNKLFVDGKYEEALSQYEVALQVAPDTPSSVDIRSICHSNRGVCFLKLGKYDDTIKECTKALELNPVYVKAFVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQARKTIRRLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01647 293 ProSiteProfiles TPR repeat profile. 196 229 IPR019734 GO:0005515
Viun5g01647 293 Gene3D Tetratricopeptide repeat domain 78 259 IPR011990 GO:0005515
Viun5g01647 293 MobiDBLite consensus disorder prediction 47 67 - -
Viun5g01647 293 Pfam Tetratricopeptide repeat 164 193 IPR001440 GO:0005515
Viun5g01647 293 ProSiteProfiles TPR repeat profile. 162 195 IPR019734 GO:0005515
Viun5g01647 293 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 7 293 - -
Viun5g01647 293 SUPERFAMILY TPR-like 117 239 IPR011990 GO:0005515
Viun5g01647 293 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Viun5g01647 293 MobiDBLite consensus disorder prediction 68 89 - -
Viun5g01647 293 MobiDBLite consensus disorder prediction 1 119 - -
Viun5g01647 293 MobiDBLite consensus disorder prediction 8 22 - -
Viun5g01647 293 SMART tpr_5 162 195 IPR019734 GO:0005515
Viun5g01647 293 SMART tpr_5 196 229 IPR019734 GO:0005515
Viun5g01647 293 SMART tpr_5 121 154 IPR019734 GO:0005515
Viun5g01647 293 Pfam Tetratricopeptide repeat 197 229 IPR013105 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01647 69 252 Calmodulin-binding Proteins AT3G25230 34.375 4.19e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01647 K24926 - gmx:100808386 390.963