Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01643 ATGGAGCCATTGTCTCTCAGACTCTTCTTCACTCTCACCGTTCTGCTTGCGGTGTTGTTTTCTGCTGCCTCCACCGCAGCCAATGAAAATGAGATCACCAAACACAAAGCCACAGAATCAAGGGATGTGGTTGAGGAAAAGAAGTTGCGTGTTCAGAGCTTGAAGAATTCGTCGGCGGCAGCAGAAAGGTTGGAGGATGCTTTGAATAAACACGCAATTGATAATCCAGAGGAGATTGCTTCTATGGTTGATGAGAGCATCCGCAATTCGACGGCTCGAAGAAATCTGAATTTCTTCTCATGTGGGACGGGGAACCCAATCGATGACTGCTGGCGGTGCGACAAGCGGTGGTACCTCCGGCGAAAGCAGCTCGCCAACTGCGGCATCGGCTTCGGCCGCAACGCAATCGGCGGGCGCGACGGCCGCTACTACGTGGTGACGGACCCGAACGACGACGACCCAGTGAACCCGAAACCGGGAACGCTCCGACACGCCGTGATCCAGGACCGTCCCCTGTGGATCGTGTTCAAGAGGGACATGGTCATCACGCTGAAGCAGGAGCTGATAATGAACAGCTTCAAGACCATCGACGGGCGCGGCGCCAACGTCCACATCGCCTACGGCGCGTGCATCACCGTCCAGTTCATCACCAACGTCATCATCCACGGCCTCCACATTCACGACTGCAAGCAAACTGGCAACGCCATGGTTCGCAGCTCCCCCTCCCACTACGGGTGGAGAACGCTCGCTGACGGGGATGGCATCTCCATCTTTGGTTCAAGCCACATATGGATCGACCATAACTCCCTCTCCAGTTGCTCTGACGGACTCATCGACGCCATTATGGGCTCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTGATGCTCCTGGGTCATAGCGACTCTTATGTCCGCGACAAGCAGATGCAGGTCACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGAATGCCCAGGTGCAGACACGGGTATTTCCACGTGGTTAACAATGACTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTAATCCCACAATTAACAGCCAAGGAAACAGATACCTTGCCCCCGTGAACCCTTTTGCCAAAGAGGTAACAAAGAGAGTAGACACTGGTTCATCCGTATGGAAAAGTTGGAATTGGAGGTCTGAAGGAGACCTTTTGCTGAATGGAGCCTTTTTCACTTCTTCGGGAGCAGGAGCTGCAGCAAGCTACGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTTGGTTGGTACCCTTACCTCTGGATCTGGTGTTCTTAACTGTCGCAGGGGTAACATGTGTTAA 1362 0.5301 MEPLSLRLFFTLTVLLAVLFSAASTAANENEITKHKATESRDVVEEKKLRVQSLKNSSAAAERLEDALNKHAIDNPEEIASMVDESIRNSTARRNLNFFSCGTGNPIDDCWRCDKRWYLRRKQLANCGIGFGRNAIGGRDGRYYVVTDPNDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITVQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPVNPFAKEVTKRVDTGSSVWKSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTLTSGSGVLNCRRGNMC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01643 453 SUPERFAMILY Pectin lyase-like 82 447 IPR011050 -
Viun5g01643 453 FunFam Pectate lyase 104 446 - -
Viun5g01643 453 Gene3D - 104 446 IPR012334 -
Viun5g01643 453 Coils Coil 44 64 - -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Viun5g01643 453 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Viun5g01643 453 PANTHER PECTATE LYASE 18-RELATED 73 451 IPR045032 GO:0030570
Viun5g01643 453 SMART amb_all 179 376 IPR002022 -
Viun5g01643 453 Pfam Pectate lyase 187 368 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01643 Viun-Chr5 14141568 14147681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01643 47 453 Polysaccharide Lyase AT4G13710 77.295 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01643 K01728 - gmx:100809277 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01643 5 14141568 14147681 Viun5g01643 5 14141568 14147681 ECH