Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01635 ATGGAGTGTGAAGTGAAGTTACAAGGGGGAGATCTGCATGCAGAGGTGGTAACTGAACCAAACCCTGTCGGTTTTGACAACATGGAAGAAGAACAGACTTTGTCGGTTGCCGAGAGAGAGATGTGGCTGAATGGTGACCAAGACGAGATTCTGGGAGTCAATGAGGCTTCCATGTTCTACGCGGATTTCCCTCCTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCTTCTTCATCTTCTGCGCCACCGCTTCCTCTGAAAACCATGACGTGTTCCACCACAACCACGGCAACCACCACCACTTCCTCTTCTTCCTCTTCCTCTTCATGGGCCGTGTTGAAGTCAGATGTGGAGGAAGATGTGGAGAAAAACCATGGCAACGGCTACATGCATGACCGGTTTGATGCAACGGCTTTGTCTTCCACCGCTTCCATGGAGATTTCCCAACAGCAAAACCCCGATCCTGGACTCGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTATGGACACTTTTGGGTACATGGAGCTTTTAGAGGCCAATGACTTCTTCGATCCCGCCTCAATCTTTGAGAACGAGGAGAGCGAAAACCCTTTAATAGAATTTGGAACACTGGAGGAACAGGTGTCACTGCAAGAGGGGCAACATGAAATGGTGCATCAGCAAGAGAACATTGAAGGCGATCGCAAGGTTCCATTGTGTGAAGGGATAAAAGGAGAGGAAGACGGTGGTGGCGTAGTAGATGATGAAATGAGTAATGTCTTCTTGGAGTGGCTCAAGTCTAACAAGGACAGTGTTTCTGCTAATGACTTGAGGAATGTGAAGCTGAAGAAGGCAACGATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCCATGAAACAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAGCGGCGCAAGGAGAATAGTGGCAATGTTAGCAACCCTCTTCAGGCACAGATTCAGGAACCCAGTGACCAGAACAACCAGAACAACCAGAACACGCACACGAGTGGCTCCTTTGCACCTGAATCGAACTCTTGTTTCAACAACCAGACACCCTGGTTAAATCCCCAAACTTTTGGGACAGATCAAGCCCCTATCATGGTTCCATCACAGCCCTATTCACAACCCATGGTGGGGTATGCGGGTGACCCTTACACTGGCGGTTCTGCTTCGAATAACATCACAGCCACTCATAACCATAACCATAACAATAGCCCTTACCAACCAGGCACGGAGCAATACCACATGTTGGAGTCAGCACCTTCATGGCCTCATTCTCAGTTCAATGTTCCTTCTCCTTATAGCCAGTCTTATGGGGACAACGGTCTTTTCACACCTGGGGGTTTTGGCGGCTATGGCAATAACCAGTATCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTTGATGAGGCTAGGACCCTCTGCAACTAAGGAAGCAAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTTTATCTCATCACAGGAATCACAATGGTAATCCCCTCCAGAATCAAGGGTCTGACCCTCATACAAGACTGGGAACTGATAATTGCACCACTGGTTTGGTTGCACCTCATCAAGCAAATTCTGCAGCAGCCAATTGGATGTACTGGCAGGCTATGGCGGGTGGCGCCGCTGGCCCTTTGCCACCGGTGGTTTCGGCCGATCCACTGGCCGGACAAACGGTGGTGGACCGGTCCACCATGCACACACATAATTCTCATCAGAATCGAGCTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTGTTGAAGCAAAGCGATGTGGGAAGTTTGGGAAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATCTGCCAGAGCTGGAGGCAAGAGATGGAATATCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCTAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTGAGAGCCAATGGCCTCCAAGAAGGAGATTTCATCGTCATATACTCAGATGTGAAGTGTGGGAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACCAAAAAAGCAGGAAAATCGCAGAAAAACCAGACTGGGACTAATGCATCAAATACAGCTGGAACTGCTGCCAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAAGTAGCAAATTAG 2286 0.4799 MECEVKLQGGDLHAEVVTEPNPVGFDNMEEEQTLSVAEREMWLNGDQDEILGVNEASMFYADFPPLPDFPCMSSSSSSSSAPPLPLKTMTCSTTTTATTTTSSSSSSSSWAVLKSDVEEDVEKNHGNGYMHDRFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVMDTFGYMELLEANDFFDPASIFENEESENPLIEFGTLEEQVSLQEGQHEMVHQQENIEGDRKVPLCEGIKGEEDGGGVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENSGNVSNPLQAQIQEPSDQNNQNNQNTHTSGSFAPESNSCFNNQTPWLNPQTFGTDQAPIMVPSQPYSQPMVGYAGDPYTGGSASNNITATHNHNHNNSPYQPGTEQYHMLESAPSWPHSQFNVPSPYSQSYGDNGLFTPGGFGGYGNNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLSHHRNHNGNPLQNQGSDPHTRLGTDNCTTGLVAPHQANSAAANWMYWQAMAGGAAGPLPPVVSADPLAGQTVVDRSTMHTHNSHQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKAGKSQKNQTGTNASNTAGTAANNGRSSPPKPKAEKKVAN 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01635 761 CDD BfiI_C_EcoRII_N_B3 608 709 - -
Viun5g01635 761 MobiDBLite consensus disorder prediction 505 529 - -
Viun5g01635 761 Gene3D - 606 725 IPR015300 -
Viun5g01635 761 MobiDBLite consensus disorder prediction 509 529 - -
Viun5g01635 761 ProSiteProfiles B3 DNA-binding domain profile. 610 712 IPR003340 GO:0003677
Viun5g01635 761 MobiDBLite consensus disorder prediction 333 367 - -
Viun5g01635 761 Pfam B3 DNA binding domain 611 707 IPR003340 GO:0003677
Viun5g01635 761 FunFam B3 domain-containing transcription factor FUS3 606 721 - -
Viun5g01635 761 MobiDBLite consensus disorder prediction 725 748 - -
Viun5g01635 761 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 256 727 IPR044800 GO:0003700
Viun5g01635 761 SMART B3_2 610 712 IPR003340 GO:0003677
Viun5g01635 761 MobiDBLite consensus disorder prediction 714 761 - -
Viun5g01635 761 SUPERFAMILY DNA-binding pseudobarrel domain 609 705 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01635 Viun-Chr5 13950532 13954851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01635 39 729 B3 DNA Binding Superfamily AT3G24650 48.913 1.35e-165 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun5g01635 B3 3.9e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01635 K09287 - gmx:100795226 1149.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01635 5 13950532 13954851 Viun5g01635 5 13950532 13954851 ECH