Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01624 ATGTTTGTAAAGCTTTCTTTCTCGGGAGAACTTGATACTTCTAACTCAAGGAGAATATTGCGTGTTAGTAATTTTATAAAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGAAGTTTGATCCACCGGGTCTTCAGCTTTATGAACAACTATTGTCTGTTTACAACCAGAGCTATGATGTGAACACTGAAACTGCTGAACTACGTTTAATCTGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGGCGTAGAGAGGTGGGATCATTCTCAGAAAAGGATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGAGGAATCAGGAAACATTATTGTGCCACCAAGTGAGGATATATGTCGACAAACTGAGGAGTCATTTGTGAAATCATGTACGCAATCACTGGTTATACCTGATGAGTTTCGCTGTCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGACAGACATATGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGACATGGAACGTGTCCCAAGACTCAGCAGATTCTTTCCACTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGGAATTTATGGCTCTGTAAGACAACATTGGATGGATCTTCTGAATTAGTAGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGAGGTATTGAGGATCAACGAAGTGCTGTAGGGGAGGTCCGACTTCTTGCCAAGCAAAATAGTCAAAATCGAATGCTGATTGCTGAAGCTGGTGCTATACCTCGCCTTGTTGATCTCCTTTACACATCTGATGCTGTCATCCAAGAACATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGCGGACAATAAAGAGCGTATCATGGCTGCTGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGCAGCCCGAGAAAATGCAGCAGCCACCTTTTTCAGCCTTTCTACGGTGGATGAGAACAGACTAGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTCCAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTTTGTTTATCTCAAGGAAATAAAGGACGGGCAATTAGGGCTGGTATTGGGCCCAAGTTGATAGAAATGCTAATAGAACCTGATGGGGCAATGAGAGACGAGGCATTGGCAATAATGGCTATAGTAGCTAGCCATCCCGATGGAAAAGCAGCAATTGGATCTTTGAATGTTGTATCCACTTTGGTGGAATTATTGAGCAATGGATCTCCTAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCTCTAAACTTGTCCATTGTCAATTCGCCTATGGTGATCAATATTCTCTTGGACTTGACAGAAAATGGTTCAGAAAGGGCCAGGCGGAAAGCTGGCCAGCTTCTTGAGTTAATAGGAAATCATTGTGAACATACTATGAAAACTTCTAACTAG 1614 0.4195 MFVKLSFSGELDTSNSRRILRVSNFIKVALVTTQFRRAKEKFDPPGLQLYEQLLSVYNQSYDVNTETAELRLICEKLQFINVDDVKQESLALEKMGVERWDHSQKRIQDMSLVVLKKIQDFLMEESGNIIVPPSEDICRQTEESFVKSCTQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSTPILIPNHALYGLISSWCEANGVEPPKRLGNLWLCKTTLDGSSELVDLDILVSKLSSRGIEDQRSAVGEVRLLAKQNSQNRMLIAEAGAIPRLVDLLYTSDAVIQEHAVTALLNLSIYADNKERIMAAEAVPGILHVLENGSMAARENAAATFFSLSTVDENRLAIGASGAIQALVTLFCEGSPRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAIVASHPDGKAAIGSLNVVSTLVELLSNGSPRNKENATSVLVLLCHGDPLNLSIVNSPMVINILLDLTENGSERARRKAGQLLELIGNHCEHTMKTSN 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01624 537 Pfam Armadillo/beta-catenin-like repeat 446 484 IPR000225 GO:0005515
Viun5g01624 537 Pfam Armadillo/beta-catenin-like repeat 364 402 IPR000225 GO:0005515
Viun5g01624 537 Pfam Armadillo/beta-catenin-like repeat 281 320 IPR000225 GO:0005515
Viun5g01624 537 Pfam U-box domain 155 225 IPR003613 GO:0004842|GO:0016567
Viun5g01624 537 Gene3D - 250 525 IPR011989 -
Viun5g01624 537 PANTHER U BOX DOMAIN-CONTAINING 28 525 - -
Viun5g01624 537 CDD RING-Ubox_PUB 156 208 IPR045210 -
Viun5g01624 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 228 IPR013083 -
Viun5g01624 537 SUPERFAMILY RING/U-box 155 231 - -
Viun5g01624 537 FunFam RING-type E3 ubiquitin transferase 154 228 - -
Viun5g01624 537 ProSiteProfiles U-box domain profile. 154 228 IPR003613 GO:0004842|GO:0016567
Viun5g01624 537 SMART Ubox_2 158 221 IPR003613 GO:0004842|GO:0016567
Viun5g01624 537 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Viun5g01624 537 SMART arm_5 445 485 IPR000225 GO:0005515
Viun5g01624 537 SMART arm_5 362 403 IPR000225 GO:0005515
Viun5g01624 537 SMART arm_5 281 321 IPR000225 GO:0005515
Viun5g01624 537 SUPERFAMILY ARM repeat 251 525 IPR016024 -
Viun5g01624 537 FunFam RING-type E3 ubiquitin transferase 239 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01624 Viun-Chr5 13709167 13719738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01624 10 536 U-box Gene Family AT3G46510 50.568 3.29e-171 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01624 - - vum:124836668 939.488