Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01623 ATGGCGGAAACGGACCCTTCCTGGGTTCTCCGCAACCTCTCTCGCGTTTCCACCCAAATCTCGTACCTCTCCTCCTTTAAGCCTATCCTCAGAACCCAATGCTGCGACCTAGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCTCGAATTGCATGACAACGTCGTCTTGTCCAGTGCCGTTTCCTTCCACGCGCTTCAGGAAGCGCTCTTCAAGGCCAAGGATTTGCTCCAATTCGCCACCACCGCAAGTCAGGTTTTCATGATACTGGACAGAGAGCAAGTTAAGCACAGATTCACAGATGTTGCTGTTCGTTTTGAACATGCTATGAGCAAGATCTCCTTTGATGAGCTTGATGTTTCAGAAGAAATCAAGGAACAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGAAGTTTGATCCACCGGGTCTTCAGCTTTATGAACAACTATTGTCTGTTTACAACCAGAGCTATGATGTGAACACTGAAACTGCTGAACTACGTTTAATCTGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGGCGTAGAGAGGTGGGATCATTCTCAGAAAAGGATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGAGGAATCAGGAAACATTATTGTGCCACCAAGTGAGGATATATGTCGACAAACTGAGGAGTCATTTGTGAAATCATGTACGCAATCACTGGTTATACCTGATGAGTTTCGCTGTCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGACAGACATATGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGACATGGAACGTGTCCCAAGACTCAGCAGATTCTTTCCACTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGGAATTTATGGCTCTGTAAGACAACATTGGATGGATCTTCTGAATTAGTAGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGAGGTATTGAGGATCAACGAAGTGCTGTAGGGGAGGTCCGACTTCTTGCCAAGCAAAATAGTCAAAATCGAATGCTGATTGCTGAAGCTGGTGCTATACCTCGCCTTGTTGATCTCCTTTACACATCTGATGCTGTCATCCAAGAACATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGCGGACAATAAAGAGCGTATCATGGCTGCTGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGCAGCCCGAGAAAATGCAGCAGCCACCTTTTTCAGCCTTTCTACGGTGGATGAGAACAGACTAGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTCCAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTTTGTTTATCTCAAGGAAATAAAGGACGGGCAATTAGGGCTGGTATTGGGCCCAAGTTGATAGAAATGCTAATAGAACCTGATGGGGCAATGAGAGACGAGGCATTGGCAATAATGGCTATAGTAGCTAGCCATCCCGATGGAAAAGCAGCAATTGGATCTTTGAATGTTGTATCCACTTTGGTGGAATTATTGAGCAATGGATCTCCTAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCTCTAAACTTGTCCATTGTCAATTCGCCTATGGTGATCAATATTCTCTTGGACTTGACAGAAAATGGTTCAGAAAGGGCCAGGCGGAAAGCTGGCCAGCTTCTTGAGTTAATAGGAAATCATTGTGAACATACTATGAAAACTTCTAACTAG 1914 0.441 MAETDPSWVLRNLSRVSTQISYLSSFKPILRTQCCDLARRIRFLAPLFLELHDNVVLSSAVSFHALQEALFKAKDLLQFATTASQVFMILDREQVKHRFTDVAVRFEHAMSKISFDELDVSEEIKEQVALVTTQFRRAKEKFDPPGLQLYEQLLSVYNQSYDVNTETAELRLICEKLQFINVDDVKQESLALEKMGVERWDHSQKRIQDMSLVVLKKIQDFLMEESGNIIVPPSEDICRQTEESFVKSCTQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSTPILIPNHALYGLISSWCEANGVEPPKRLGNLWLCKTTLDGSSELVDLDILVSKLSSRGIEDQRSAVGEVRLLAKQNSQNRMLIAEAGAIPRLVDLLYTSDAVIQEHAVTALLNLSIYADNKERIMAAEAVPGILHVLENGSMAARENAAATFFSLSTVDENRLAIGASGAIQALVTLFCEGSPRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAIVASHPDGKAAIGSLNVVSTLVELLSNGSPRNKENATSVLVLLCHGDPLNLSIVNSPMVINILLDLTENGSERARRKAGQLLELIGNHCEHTMKTSN 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01623 637 FunFam RING-type E3 ubiquitin transferase 254 328 - -
Viun5g01623 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515
Viun5g01623 637 CDD RING-Ubox_PUB 256 308 IPR045210 -
Viun5g01623 637 Gene3D - 29 116 IPR036537 GO:0007166
Viun5g01623 637 PANTHER U BOX DOMAIN-CONTAINING 31 625 - -
Viun5g01623 637 SMART arm_5 545 585 IPR000225 GO:0005515
Viun5g01623 637 SMART arm_5 462 503 IPR000225 GO:0005515
Viun5g01623 637 SMART arm_5 381 421 IPR000225 GO:0005515
Viun5g01623 637 Pfam Armadillo/beta-catenin-like repeat 381 420 IPR000225 GO:0005515
Viun5g01623 637 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515
Viun5g01623 637 Pfam Armadillo/beta-catenin-like repeat 546 584 IPR000225 GO:0005515
Viun5g01623 637 SUPERFAMILY RING/U-box 255 331 - -
Viun5g01623 637 SUPERFAMILY ARM repeat 351 625 IPR016024 -
Viun5g01623 637 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Viun5g01623 637 FunFam RING-type E3 ubiquitin transferase 339 631 - -
Viun5g01623 637 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Viun5g01623 637 Gene3D - 350 625 IPR011989 -
Viun5g01623 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Viun5g01623 637 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01623 Viun-Chr5 13707851 13719738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01623 3 636 U-box Gene Family AT3G46510 47.179 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01623 - - vum:124836668 1170.61