Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01568 ATGTGCCACAAGCATGGCATGATGCATCGGGATCTTAAGCCGGAAAACTTTCTATTTGCAAAAACTACAACTTTGAAGACTATAGATTTTGGGTTGTTAGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCCTCTGAGGTATTGAAGCGGAATTATAGGCTAGAAGTAGATATCTGGAGTGTTGGAGTAATTTTATACATCTTACTTTGTGGTGTTCCACCATTTTGTGCAGTTCGGCAACAACAAGTTATAATAACTAAAAAGAATGCCAGTAAACTGGTTGGCATTCTTCATGAGTTTGGAACCTCAAAAGATTGTCATCCTATGCCATGGTCTTCAACCCACCAAGGAAGACAATATCATGATAAATCTTGCTTCTGCTCTAGAGAATGCAGGATTCAGTTCTTTCCGCTTTGA 447 0.387 MCHKHGMMHRDLKPENFLFAKTTTLKTIDFGLLVFFKPGERFNEIVGSPYYMAPSEVLKRNYRLEVDIWSVGVILYILLCGVPPFCAVRQQQVIITKKNASKLVGILHEFGTSKDCHPMPWSSTHQGRQYHDKSCFCSRECRIQFFPL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01568 148 PANTHER SERINE/THREONINE-PROTEIN KINASE 2 95 - -
Viun5g01568 148 SMART serkin_6 1 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01568 148 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Viun5g01568 148 ProSitePatterns Serine/Threonine protein kinases active-site signature. 7 19 IPR008271 GO:0004672|GO:0006468
Viun5g01568 148 Pfam Protein kinase domain 2 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01568 148 SUPERFAMILY Protein kinase-like (PK-like) 2 100 IPR011009 -
Viun5g01568 148 ProSiteProfiles Protein kinase domain profile. 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01568 Viun-Chr5 13036928 13038777 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01568 1 93 EF-hand Containing Proteins AT3G57530 79.167 2.06e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun5g01568 Pkinase 1.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01568 K13412 - pop:7465144 155.606