Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01551 ATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCATTACTACGCGCATACGTCAAGCAGTATGGTCCTAGAGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATGCAAAGTCATGCTTAGAGAGGTGGAAGAACTACCTGAAGCCTGGCATTAAGAAAGGATCTCTCACAGAGGAAGAGCAGCGTCTTGTCATCAACCTTCAAGCAACACACGGAAACAAGTGGAAGAAAATTGCAGCACAAGTTCCAGGTCGCACTGCCAAGAGGTTAGGAAAGTGGTGGGAAGTGTTCAAGGAGAAGCAGCAAAGAGAAACAAAGGGGAATAACTGCACCATTGATCCAATCAACGATAGCAAGTACGAGCATATACTTGAGAGTTTTGCTGAGAAACTAGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCTTTTCTGCACACTGATCAACCTGCGCCTGCACAGGCCTTGCTTCCATCTTGGCTTTCAAACTCCAATGGCACTGCACCTGTGAGGCCACCCTCCCCTTCTGTGACTCTCAGTCTGTCTCCCTCGACGGTGGCGGCGCCGCCTCCGTGGATGCAACCGGTGAGAGGACCGGACAGTGGTGGTCCTCTTGTTTTGGGGAATGTGGGTCCTCATGGAGGTGTTGTAGCATTTGGTGAAAACATGGTGATGTCTGAACTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCTCACAAGAAGGAGGCGGCGTGGCGGTTGAGCAGGGTGGAGCTGCAGCTGGAGTCGGAGAAGGCTGGCCGGAGACGGGAGAAGATGGAGGAAGTTGAAGCAAAGATGAAAGCTTTGAGGGAGGAACAAGCAGCTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTAGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACATGCGTCTCAGTAAATTTCTCGAACAGGTAGGATGCAGATCAAGGCTCTCTGAACCAAATGGGAGATAG 1071 0.4986 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNNCTIDPINDSKYEHILESFAEKLVKERPSPSFVMATSNSSFLHTDQPAPAQALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWMQPVRGPDSGGPLVLGNVGPHGGVVAFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKAGRRREKMEEVEAKMKALREEQAAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHMRLSKFLEQVGCRSRLSEPNGR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01551 356 Gene3D - 4 58 - -
Viun5g01551 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Viun5g01551 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Viun5g01551 356 Coils Coil 266 325 - -
Viun5g01551 356 CDD SANT 6 53 IPR001005 -
Viun5g01551 356 SMART sant 3 55 IPR001005 -
Viun5g01551 356 SMART sant 58 106 IPR001005 -
Viun5g01551 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Viun5g01551 356 Gene3D - 62 123 - -
Viun5g01551 356 FunFam MYB-related transcription factor 4 58 - -
Viun5g01551 356 Pfam Myb-like DNA-binding domain 7 67 - -
Viun5g01551 356 CDD SANT 63 104 IPR001005 -
Viun5g01551 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Viun5g01551 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Viun5g01551 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01551 Viun-Chr5 12912084 12915102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01551 1 347 MYB Transcription Factor Family AT2G37630 66.301 2.10e-159 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g01551 Myb_DNA-bind_6 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01551 K09422 - gmx:100819082 637.491