Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01538 ATGGTTGAGTCAGCCATGTCAAAGACAATGATGGAGGAAGTAATGGCAAGTTGGTCAGAGGGGTCAGAGGAAGAAGAGCTTGTGAGAGAGCTTTTGGATGATGGCTCTCCCCTTCTTGTGCTGTCTCAGGAGGCAATTCAAAACCCCATAACAAAACCCTCTTCAACTCACTTCCTCTCCAACATTTACTCAGGACCTACCATCTCAGATATTGAAAATGCCTTGTCACTCACCAACCACAGAGACCACTTTCCACCACTCTCATCACCCAGAATTTCAATATTGGAGAGGGGTTTGAGCAAGATTGAGAATAAGTATACCCTCAAAATCAAATGCTTTGGCAATGGGATGGGAGATGATGGATACAAGTGGAGAAAATATGGACAGAAATCTATTAAGAATAGTCCAAATCCTAGGAGTTACTATAGGTGCACAAACCCAAGGTGCAGTGCCAAGAAGCAAGTTGAGAGATCCATTGAGGACCCAGACACTCTAATCATAACCTATGAAGGGCTCCACTTGCACTTTGCTTACCCATATTTTGTCATGGGCCAACCAAACCAATCTCAATCCGATCAACCTATCAAGAAGTCCAAACCCACTTCTTCAGAGGACCAAGTCCAAGCCCATATAGAAGATTATGTCCATGAGGCCCAATCAAGTGCTACTTCGGGTGTGATGCCATCCACTTCACTGGACTCTCCACAAGACATGGCCCAGGAAAACATGGGCTCACAAGGATTGCTTGAAGATATGGTCCCATTCATGGTTCGGAACCCATCAAACAGTGTGAACACAAAATTTTCTTGTTCGTCGTTTCGATCTCCTCCAACATCTCCTATGTGGCTTAAATTCTAG 858 0.4452 MVESAMSKTMMEEVMASWSEGSEEEELVRELLDDGSPLLVLSQEAIQNPITKPSSTHFLSNIYSGPTISDIENALSLTNHRDHFPPLSSPRISILERGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFVMGQPNQSQSDQPIKKSKPTSSEDQVQAHIEDYVHEAQSSATSGVMPSTSLDSPQDMAQENMGSQGLLEDMVPFMVRNPSNSVNTKFSCSSFRSPPTSPMWLKF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01538 285 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 102 204 IPR044810 GO:0003700
Viun5g01538 285 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01538 285 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01538 285 SUPERFAMILY WRKY DNA-binding domain 116 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01538 285 MobiDBLite consensus disorder prediction 219 240 - -
Viun5g01538 285 Gene3D WRKY domain 114 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun5g01538 285 MobiDBLite consensus disorder prediction 187 206 - -
Viun5g01538 285 Pfam WRKY DNA -binding domain 119 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun5g01538 285 FunFam WRKY transcription factor 105 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01538 Viun-Chr5 12674225 12676736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01538 60 259 WRKY Transcription Factor Family AT5G43290 46.330 8.34e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun5g01538 WRKY 1.7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01538 - - gmx:100803946 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01538 5 12674225 12676736 Viun5g01538 5 12674225 12676736 ECH