Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01530 ATGGCTTCTTTGAGATCTTCTTCTTCATTCTGGTGCTACCGATGCAACCGCGTCGTTAGGGTTTCCCTCGCTGCAGAAGCGCAGCGAGATCCTACCATTCTCTGCCCCGATTGTCACTCCGGTTTTCTCGAAGAGCTCCACACGCCTCCCCACTCGCGTCGATCCACGCGCGCCGGGTCGCCCTTCAATCCCGTGATCGTGTTGCGCGGGGGAAACGGAAACGAAAACGCAAGCGCCAACGAAAACGAAAACGATGTCGCCTCGGGGAACTTCGAGCTCTACTACAACGACGGCGTTTCGGGTCCGGGCCCCAGCGGCCTGCGCCCGCTGCCCGCGGGCGTGACCGACTTTCTCATGGGCTCCTCGGGCTTCGATCACTTGCTGGATCAGCTGGACGGCACCGCGGTGCGCCTCGACCGGGCAGCGTCGAAGGCGGCGATCGAGTCGATGCCGGTGGTGAAGATCCTGGCGAGTCACGCGCACGCGGAGTCCCACTGCGCGGTGTGCATGGAAAATTTTCAAGTGGATTGCGATGCACGTGAGATGCCGTGCGGGCACGTGTATCACTCGGAGTGCATCGTGCCGTGGCTGTCTGTGCGGAACTCGTGCCCCGTGTGCCGCCGCGTGGTTCCTTCAGATGAAGTTGATGATAACAATACGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCAGGCTCATCGGTGGTAGAGAACTGCCCCTGGTGTACACGGAGATGGACGGCGCGTTTAACGCCTCTAACGGCGTTCCCAGGAGAGTCTCCTGGGATTCTTCTATCGGTAGGTCTAGAGAGAGTAGGGGCTTTGCTTCTGCTTTTCGGAATCTTGTTTCCTATTTCGGAAGAGTTAGGAGTTCCTTTTCTCGTGGAACGAGAAACTCGCGTCTCAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTCGATCAAGATTTTAA 984 0.5772 MASLRSSSSFWCYRCNRVVRVSLAAEAQRDPTILCPDCHSGFLEELHTPPHSRRSTRAGSPFNPVIVLRGGNGNENASANENENDVASGNFELYYNDGVSGPGPSGLRPLPAGVTDFLMGSSGFDHLLDQLDGTAVRLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVDDNNTMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNASNGVPRRVSWDSSIGRSRESRGFASAFRNLVSYFGRVRSSFSRGTRNSRLNGRSRSATTIFSRFRSRSRF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01530 327 Pfam Ring finger domain 165 207 IPR001841 -
Viun5g01530 327 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Viun5g01530 327 SUPERFAMILY RING/U-box 146 213 - -
Viun5g01530 327 SMART ring_2 166 206 IPR001841 -
Viun5g01530 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 213 IPR013083 -
Viun5g01530 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 85 209 - -
Viun5g01530 327 Pfam zinc-ribbon 9 46 IPR039525 GO:0061630
Viun5g01530 327 Pfam Protein of unknown function (DUF1117) 221 321 IPR010543 -
Viun5g01530 327 FunFam E3 ubiquitin-protein ligase RNF181 133 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01530 Viun-Chr5 12491951 12493391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01530 109 216 C3H Transcription Factor Family AT5G01980 41.818 8.97e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01530 K11982 - gmx:121172634 453.751