Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01529 ATGTCGTTGCACCGTGGTGAAGGAGATGAGCTCTACGAGCAACTGTGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCAGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCCGAACCAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTGCCGGAAAATAATCAAACTGAGCCTACAAGCCCTGATCCGTGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTATTAACCGCTTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTTCGGAAGCATGCTACTGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCTCGTAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAGCAACGGAGAACTGCGAGTTGGAGTGAGGCGTCTTACTCCCGTTCAAAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACACTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTACTTGGAGGCTATCAACCAAAAATGTAATGTTGGCATGAGATTGAAGATGAGGCTTGAAGGGGATGATTCTACTGAAACAGACAAAAGAATTTCGGGCACAGTAATCGGAGTAGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTACGTCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTACCTACAAAAATATCATCTCAAACTGTTGTTATAAAGAATAAAAGGCCTCGACAAGCAAGTGAAGTTTCAGATCTTGGAGACACACCATTAATTGCGCCTACTTTCTGGGATCCTGGTCTGACACAGTCTGATATTACACAACTTGGTGTTATGGACGAAAGCAAAAGGAGTGAAAGTAGTGCTCACATGTGGCATCATAACAATAACAACAGCAGCAACGGTATATCAATGAATCAGAGAAAAGCAAGTTGGCTGTCTTCTCCTTCTCCTTCGCCTACTTCAAAAGCTCACTCCGAAAGATTGAACAGTGACCATTGCCTTGACCAGGTTGACAAGGAGATCAGCAAAGTAGAGCCTGCAACAGGGTGCAGATTGTTTGGAATTGAACTTATTGATCATACAAGGAGCAACTCTCTTTCTGTAGATCATGCATCTGCAGTAGCATCTGAGGGCAGAACTGATGCAAACCACGAGTCTGATATCTCAAAGGCTTCCAAAGAATGGAAACAAGAACAGCCACAAGTATCCCCAAAAGAGACTCAAAACAAGCAAATTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGTTATGAACAACTTGTAGATGAATTGGAGAAGATGTTCGACATAAAGAGACAGCTTCAACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAACATGGTGAGAAGAATCTTCATTTGCTCCAGCCAGGATGTGCACAAACTGAGCTCAGGGAGCAAACTACCTATCTCTTCAATTGAAGAGACTGTAATAAGCTCAGACACAGCTGAGACCTGA 1947 0.4432 MSLHRGEGDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEPETDEVYAQITLVPENNQTEPTSPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLTPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRLKMRLEGDDSTETDKRISGTVIGVEDISPHWVNSKWRSLKVQWDEPTSFPRPDRVSPWEIEPILASVPTKISSQTVVIKNKRPRQASEVSDLGDTPLIAPTFWDPGLTQSDITQLGVMDESKRSESSAHMWHHNNNNSSNGISMNQRKASWLSSPSPSPTSKAHSERLNSDHCLDQVDKEISKVEPATGCRLFGIELIDHTRSNSLSVDHASAVASEGRTDANHESDISKASKEWKQEQPQVSPKETQNKQICSRSCTKVQMQGVAVGRAVDLTTLDGYEQLVDELEKMFDIKRQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPISSIEETVISSDTAET 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01529 648 Gene3D - 277 350 - -
Viun5g01529 648 MobiDBLite consensus disorder prediction 495 533 - -
Viun5g01529 648 FunFam Auxin response factor 114 218 - -
Viun5g01529 648 MobiDBLite consensus disorder prediction 518 533 - -
Viun5g01529 648 MobiDBLite consensus disorder prediction 503 517 - -
Viun5g01529 648 MobiDBLite consensus disorder prediction 413 447 - -
Viun5g01529 648 FunFam Auxin response factor 533 626 - -
Viun5g01529 648 ProSiteProfiles PB1 domain profile. 538 619 IPR000270 GO:0005515
Viun5g01529 648 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 626 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun5g01529 648 SMART B3_2 116 218 IPR003340 GO:0003677
Viun5g01529 648 Pfam AUX/IAA family 579 625 IPR033389 -
Viun5g01529 648 Pfam AUX/IAA family 506 574 IPR033389 -
Viun5g01529 648 CDD B3_DNA 114 216 IPR003340 GO:0003677
Viun5g01529 648 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
Viun5g01529 648 MobiDBLite consensus disorder prediction 401 454 - -
Viun5g01529 648 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Viun5g01529 648 Coils Coil 562 582 - -
Viun5g01529 648 SUPERFAMILY CAD & PB1 domains 541 614 - -
Viun5g01529 648 FunFam Auxin response factor 277 350 - -
Viun5g01529 648 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun5g01529 648 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Viun5g01529 648 Gene3D - 534 626 - -
Viun5g01529 648 Gene3D - 113 217 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01529 Viun-Chr5 12431723 12436434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01529 4 631 B3 DNA Binding Superfamily AT4G23980 60.436 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun5g01529 AUX_IAA 3.6e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01529 K14486 - gmx:100799088 1097.42