Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01523 ATGTTTCTCGAGGTTGTAGCAGTGGTGTTTGTGCTGGCAACAACAACAGTGACTGGTGAAGATTCCGTGAGTTTCACCTATAATGGGTTCCGATCAGCACCTCATTTGTATCTTGACGGCGGCGCTGAGTTCACCTCCTGTGGCATGCTTAAACTCACCAACCACACCAGGCAACAAAAGGGTCATGCTTTCTTCCAAAGTCCAATAGCCTTCAAGAACACCACAAATGGAAGTGCATCTTCTTTCTCCACCTCCTTTGTGTTTGCGATAAGTTCTGAGTATCCGGATTTGAGTGGTCATGGGATTGTGTTTGTGGTTTCTCCAACAAAAGGGCTTCCAAATTCTCTGCCAAGCCAGTACCTTGGCCTGTTTGATAACACCAACAATGGCGACACCGGCAACCATGTTTTCGGGGTGGAGCTCGATACTATTCAGAACATTGAATTTGGTGATATCAATGACAACCATGTTGGAATTGATGTCAACGAATTGAAGTCGGTTAAGTCAGTCCCTGCAGGATATTACAGTGACGGGGGGATTAAGAATTTGAGTCTCATCAGTGGCTACCCAATGCAGTTATGGGTGGAATATGATGGCCTAAAGAAGCAGATTGATGTTACTTTAGCTCCAATCAACATAGGCAAACCAGAAAGGCCTTTGTTATCTTTAAGCAAAGATCTTTCTCCAATTCTTAACAATAGCATGTACGTTGGATTCTCATCCTCAACTGGGTCAATTCAAAGTTATCATTATATTTTGGGTTGGAGCTTTAAGTTGAATGGCCAGGCTGAACAACTTGCCATCTCTGAACTCCCCAAGCTACCTGGACGAGGCAGTAAAGAACAGTCTAAGGTTCTTATTATTGTTTTGCCTATCATATCAGTCATTTTGGTCATCGTGGTGGTGGCTCTTGCAATGGTTCATGTCATGAAAAGGAAGAAGTTCACGGAGCTGCTTGAAGATTGGGAGCAAGACTATGGTCCTCACAGGTTCAAGTACAAAGATCTTAGCCTGGCAACAAAGGGGTTCAGGGAGAAGGAGCTATTGGGAAGCGGTGGATTTGGCAGAGTGTACAAAGGTGTGATGCCAATTTCAAAACTTGAGGTTGCAGTGAAGAAGGTGTCCCATGAATCAAGACAAGGGATGAGAGAATTTGTGGCAGAAATTGTTAGCATTGGGCGTCTCAGGCACAAGAATCTGGTTCCCCTTCTGGGGTACTGCAGGCGCAAAGGAGAGTTACTATTGGTCTATGACTACATGCCAAATGGAAGCCTTGACAAGTATCTCTACAACAAACCAAGAGTGACCCTAAATTGGAGCCAGAGATTTAGAATCACCAAAGGGGTTGCTTCAGGTCTGCTTTATCTGCATGAGGAATGGGAGCAAGTTGTGGTCCACAGAGACATTAAGGCTAGTAATGTGCTACTTGATGCCGAATTGAATGGTAGATTAGGGGACTTTGGTCTTTCAAGGTTGTATGAGCATGGAAGTGACCCTCACACTACTCATGTGGTTGGAACACTTGGGTACCTAGCCCCAGAGCACACTAGAACAGGTAAGGCCACTACAAACTCTGATGTGTTTGCTTTTGGTGCATTTATGCTAGAGGTTGTGTGTGGAAGAAGGCCAATAGAGCAAATGGGGTGTTCTGGGAGTGAAATTCTGGTTGATTGGGTGTATAACTGTTGGAAAAGAGGTGAGATTCTCGAGGCAAGGGATCCAAATTTGGGCACAAATTATAAGGCAGAGGAGGTGGAGTTGGTGTTGAAACTAGCTTTGTTGTGCTCACATTCAGATCCTTCAGCCAGACCAAGCATGCGCCAAGTTGTTCAGTATTTGGAGAGGGATGTGCCTCTGCCAGATTTATCTTTGCTTAGCTTATCTTCCACTGGCTTAAGATTTGGCCTGCATGAAGACTTTCAGGATTGTCCAATGTCTTATCCTTCATCCATGGATAGGCCAATCTCTCGCACTTCTTCAATTGCTGAATCACTTCTCTCTGGTGGACGTTGA 2013 0.4481 MFLEVVAVVFVLATTTVTGEDSVSFTYNGFRSAPHLYLDGGAEFTSCGMLKLTNHTRQQKGHAFFQSPIAFKNTTNGSASSFSTSFVFAISSEYPDLSGHGIVFVVSPTKGLPNSLPSQYLGLFDNTNNGDTGNHVFGVELDTIQNIEFGDINDNHVGIDVNELKSVKSVPAGYYSDGGIKNLSLISGYPMQLWVEYDGLKKQIDVTLAPINIGKPERPLLSLSKDLSPILNNSMYVGFSSSTGSIQSYHYILGWSFKLNGQAEQLAISELPKLPGRGSKEQSKVLIIVLPIISVILVIVVVALAMVHVMKRKKFTELLEDWEQDYGPHRFKYKDLSLATKGFREKELLGSGGFGRVYKGVMPISKLEVAVKKVSHESRQGMREFVAEIVSIGRLRHKNLVPLLGYCRRKGELLLVYDYMPNGSLDKYLYNKPRVTLNWSQRFRITKGVASGLLYLHEEWEQVVVHRDIKASNVLLDAELNGRLGDFGLSRLYEHGSDPHTTHVVGTLGYLAPEHTRTGKATTNSDVFAFGAFMLEVVCGRRPIEQMGCSGSEILVDWVYNCWKRGEILEARDPNLGTNYKAEEVELVLKLALLCSHSDPSARPSMRQVVQYLERDVPLPDLSLLSLSSTGLRFGLHEDFQDCPMSYPSSMDRPISRTSSIAESLLSGGR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01523 670 Pfam Protein kinase domain 343 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01523 670 FunFam L-type lectin-domain containing receptor kinase V.9 22 264 - -
Viun5g01523 670 SMART serkin_6 343 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01523 670 ProSitePatterns Protein kinases ATP-binding region signature. 349 373 IPR017441 GO:0005524
Viun5g01523 670 Pfam Legume lectin domain 23 272 IPR001220 GO:0030246
Viun5g01523 670 PANTHER - 39 618 - -
Viun5g01523 670 Gene3D Phosphorylase Kinase; domain 1 328 419 - -
Viun5g01523 670 FunFam L-type lectin-domain containing receptor kinase S.4 420 626 - -
Viun5g01523 670 Gene3D Transferase(Phosphotransferase) domain 1 420 618 - -
Viun5g01523 670 CDD STKc_IRAK 349 615 - -
Viun5g01523 670 SUPERFAMILY Protein kinase-like (PK-like) 324 625 IPR011009 -
Viun5g01523 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Viun5g01523 670 Gene3D - 20 272 - -
Viun5g01523 670 ProSiteProfiles Protein kinase domain profile. 343 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun5g01523 670 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246
Viun5g01523 670 FunFam Lectin-domain containing receptor kinase A4.3 328 419 - -
Viun5g01523 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 277 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01523 Viun-Chr5 12383306 12385692 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01523 18 670 Receptor kinase-like Gene Family AT2G37710 63.567 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun5g01523 Pkinase 9.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01523 - - gmx:100783815 1095.49