Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01518 ATGTCTTCTTGCTACTTCCCTTTCACTTGCCAAAGAAAAATGGAGTTCAGCACCCCAATCTATAAGAAATCTGAGATAAGGTGGAGCTCAGAAGAAGAAGGTGGTCCTGGACAAGTGAAATCGTATTCTTGTTCCTTCTGCAAGAGAGGGTTCTCTAATGCACAAGCCCTAGGTGGCCACATGAATATCCACAGAAGAGATAGGGCAAAGCTCAAGCAATCTTCTGAAGAAAGCTTGCTTTCGTTGGACATCTCAATCAAGACCACAAGTGATCACAGTAACGACCCTTCTGATTTGGAAGAGAAAATCTTGTTTCGGTTGGGTTCTGGAGAAGATCAGAAGCATGCTAGAAATCGAAAAATGCCATTCAATTTCCCTCTCAAAAGTGATCATGATTATGCACCAGAAAGGGGCATGTTGATTGGTTCAGCAGAAATTCCTTCTTTTGTTTTGGGGCAGAGAATTGAAGAGAACAAAGCTGATTTAGACCTTGAACTTAGGTTAGGGCTTCATCCCCAGGAGTCTGCAACGTTGAACACAAGATCGTTCTTTTGA 555 0.4252 MSSCYFPFTCQRKMEFSTPIYKKSEIRWSSEEEGGPGQVKSYSCSFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEESLLSLDISIKTTSDHSNDPSDLEEKILFRLGSGEDQKHARNRKMPFNFPLKSDHDYAPERGMLIGSAEIPSFVLGQRIEENKADLDLELRLGLHPQESATLNTRSFF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01518 184 Gene3D Classic Zinc Finger 22 97 - -
Viun5g01518 184 SUPERFAMILY beta-beta-alpha zinc fingers 40 68 IPR036236 -
Viun5g01518 184 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Viun5g01518 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Viun5g01518 184 PANTHER OS07G0101800 PROTEIN 22 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01518 Viun-Chr5 12302337 12302891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01518 38 177 C2H2 Transcription Factor Family AT3G53820 38.621 2.48e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g01518 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01518 - - ccaj:109793777 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01518 5 12302337 12302891 Viun5g01518 5 12302337 12302891 ECH