Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01517 ATGGAGGAGGGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTATGAGCTCTAATCTTCATGGTTCTTCTACTAATTACCCTTCCTATGATGACCACTCATGGGAAGAACAAGCCTTTGCTAAAGATGCAGCTTGGTCTGGTTGCGTGTGGCCACCACGATCATATTCTTGTACCTTTTGCACAAGGGAATTTAGGTCAGCACAGGCTTTAGGAGGCCACATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAACCATATAGCCCTCAGAATGAAATCCTCAATGATGATATTGAGAAAACACAAGCCCAGAATTCGGTTCAAATTTCTTTCACTTCATTGGGTTACTTATACCCACCTTCTATCAGTGGATTGGCTCATAACACTAACCCTAATTCTGATCCTTATTCTCATGTTGTTGCTCCACCTTCCAAAGTTTTAGGCACATCAGTTAACAAGAGATGCAGAGAGAAACCCCAGATTCCGCTGTACAATAACTCTTCAATTTTCAAAGGATGTCATGAGTCTTCCCCTTCTCTTTCTTCCAAATCCTGGCCAAATTTAACCGATGACTTCAGATTTTGTTCGAGTAGGCTCGATCTTGAAGCTAGTGTTGAGAAAAAGTTGCAGGGATTGGATTCTGGGTGTAGGAGTGAGGGTGATAAGGGTAAAACTGAGGTGGCTATGAGCATGAACTTGTTTATGAGTCAAGCTCACCCAGTTGTGGAGTTTGAGAATAAAGAGACAGATACAAGTTTCAAGAAGAGAAAATCAGACACTTCATCCATTCCATTCTTTCCCAAACCATGTTCAGTTGATAAGGATCATGTGCAGTCAGAGATGTTTGATTTTAGCCCTAGCTCTATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTATAGGTCCGAGGTATAG 921 0.4159 MEEGQCLIRSKRKYSMSSNLHGSSTNYPSYDDHSWEEQAFAKDAAWSGCVWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPYSPQNEILNDDIEKTQAQNSVQISFTSLGYLYPPSISGLAHNTNPNSDPYSHVVAPPSKVLGTSVNKRCREKPQIPLYNNSSIFKGCHESSPSLSSKSWPNLTDDFRFCSSRLDLEASVEKKLQGLDSGCRSEGDKGKTEVAMSMNLFMSQAHPVVEFENKETDTSFKKRKSDTSSIPFFPKPCSVDKDHVQSEMFDFSPSSIEELDLELRLGYRSEV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01517 306 Pfam C2H2-type zinc finger 56 80 - -
Viun5g01517 306 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Viun5g01517 306 Gene3D Classic Zinc Finger 52 112 - -
Viun5g01517 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Viun5g01517 306 PANTHER OS07G0101800 PROTEIN 29 303 - -
Viun5g01517 306 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Viun5g01517 306 SMART c2h2final6 56 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01517 Viun-Chr5 12292918 12294246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01517 1 87 C2H2 Transcription Factor Family AT5G06070 52.222 1.53e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun5g01517 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01517 - - vra:106758996 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01517 5 12292918 12294246 Viun5g01517 5 12292918 12294246 ECH
Viun5g01517 5 12292918 12294246 Viun8g02218 8 32396142 32396885 ECH