Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01481 ATGGCTGAGGGTTTTGAGCACTACCATGTCCCACAACAAAGTAGGAGGGACAAGCTAAGAGTTTTCGCTCAGAACCACCCTTCTTTCGTTGAATCTTCCTCTATCCTTCACCCCACTTGTCCAAATTTAACCTCTCTCTACGATCCTTCTCTTATACCCTCTGATTTGTTAGCTTGTGCCACCCAACAAGCTTCCGCTGCTAAGGGAGAAGGTTCCAATTTGATGATGGGGTTTGTGGAAGGAGGGGTTGTGAATGGTGATGCAATTCATGTTATCAACAGTAATAGCAACCACCACCACAACAACAACAACAACCCTTTTCTCTATCAGCTTCAGAACCTTAGGGAATTTGGTGATGCCTACAATGATGCCAGTGAGATGATGGTGTTCAAGCCCGAGCCTTTGTCTTTGTCTTTGTCTTCACAGAGTAACAACACTCATCTGAATCTTCAGCGATTTGGGGCTGTTATTCCAGGTTTGGTTGGAAGGAACAGTGAGGTTTCGAGGAATTCGGCTCCACTCGGACCCTTTACGGGGTATGCTTCGATATTGAAGGAATCGAGGTTCTTGAAACCTGCACAGCAATTATTGGAAGAGTTATGTGATGGTGGGGTTCGTGAAATTTACGCTTCCGAGAAGTCTCTTGCTCCTGATGCATCGTTGATGGAACCTCCTCATGAGGGTTTGAGTGCCAGTGGAGTTGTTGGTGGAGATGATCCACTTGGGGAATATGAAAATGAGAGTAGGAAGAAGAAGTGTAGATTATTAACCATGCTTGACGAGGTTTACAGGAGGTACAGGCAGTATTATCAGCAGATGCATGCAGTGATAACATCATTCGAGTATGTTTCTGGTCTTGGTAATGCAGCCCCATATGCAAGTTTGGCTATAAATGCCATGTCCAAACATTTTAAATGCTTGAAGAATGCTATCACTGACCAGCTTCAGTTCATCAACAAGGCTCCTTTTCAGATTAACAACAGAAAGGATGAATCTCCAAGGCTGCACAACACTGATAGAGGCACTTACAGCCAAAGGCCAGGGTTTCTTGAACACCAACAACCAGTTTGGCGACCTCAAAGAGGACTTCCTGAGCGTGCTGTCAGTGTTCTCAGGGCCTGGTTGTTCGAACACTTTCTTCACCCTTATCCTACTGATACCGACAAGCTTATGTTGGCTAAACAAACTGGTTTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTGAGGCTTTGGAAACCAATGGTGGAAGAAATACACATGCTAGAATCACAGCAAGGTCAGAAAAGGCCACAGAGGGAAGAACAAAGTAGGAGAAACTTAAGTGGTGGTGGTGGTGGTGGTGATCATTTACCTTCAGACAACTCTCTTGTTACTGAGAATATTCCATGTAGCTCCATGGAGAAGTTTCAGGATGCCCCTTATAAACAACACAGAAATGAAATTGGTAATATGCAAATGAGGGGTCAGGAACAGCTGAATCAAAGTAACACGAGCAATCAGCAAATGGGTGTTGGAGTGAGCATTAATAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATGGTCTTGGATTGTCTGAGCCCTTTGGCATGAGTGCAGCTCAACGTTTTGGTGTTGCCCTTCAGCCTGAGGGCTATGTTATCAGTGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATTGGAGGAGGGCAACTGTTGCATGATTTTGTAGGCTGA 1740 0.4431 MAEGFEHYHVPQQSRRDKLRVFAQNHPSFVESSSILHPTCPNLTSLYDPSLIPSDLLACATQQASAAKGEGSNLMMGFVEGGVVNGDAIHVINSNSNHHHNNNNNPFLYQLQNLREFGDAYNDASEMMVFKPEPLSLSLSSQSNNTHLNLQRFGAVIPGLVGRNSEVSRNSAPLGPFTGYASILKESRFLKPAQQLLEELCDGGVREIYASEKSLAPDASLMEPPHEGLSASGVVGGDDPLGEYENESRKKKCRLLTMLDEVYRRYRQYYQQMHAVITSFEYVSGLGNAAPYASLAINAMSKHFKCLKNAITDQLQFINKAPFQINNRKDESPRLHNTDRGTYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQGQKRPQREEQSRRNLSGGGGGGDHLPSDNSLVTENIPCSSMEKFQDAPYKQHRNEIGNMQMRGQEQLNQSNTSNQQMGVGVSINNGVSLTLGLHQNHGLGLSEPFGMSAAQRFGVALQPEGYVISGFESQNRHFGRDVIGGGQLLHDFVG 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01481 579 SMART prehox3 178 313 IPR006563 -
Viun5g01481 579 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Viun5g01481 579 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Viun5g01481 579 Pfam Associated with HOX 183 312 IPR006563 -
Viun5g01481 579 CDD homeodomain 357 418 IPR001356 GO:0003677
Viun5g01481 579 SUPERFAMILY Homeodomain-like 359 424 IPR009057 -
Viun5g01481 579 FunFam BEL1-like homeodomain protein 9 360 422 - -
Viun5g01481 579 MobiDBLite consensus disorder prediction 426 440 - -
Viun5g01481 579 Gene3D - 360 422 - -
Viun5g01481 579 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 437 - -
Viun5g01481 579 SMART HOX_1 357 421 IPR001356 GO:0003677
Viun5g01481 579 MobiDBLite consensus disorder prediction 426 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01481 Viun-Chr5 11855842 11861441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01481 124 579 Homeobox Transcription Factor Family AT5G02030 48.491 2.56e-119 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun5g01481 POX 9.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01481 - - vun:114185080 1111.29