Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01459 ATGAACACTATTATTCGCCACCGCCTAAGGCTAATTCCAACACCTCTTCTCTATTCTTTCCCCAAATCCCCTTTTCTGCAATCCTCTTTCTCCTTCTCAACAACCACTTCTGATCCCGTCTCCTTCACTCTATCCTACCTCACCAACACCTGTGGCTTCTCACCCGAGGACGCACTAAAACTATCCAAACGGCTTCGTTTCAACACCGCCCTCGGTTTTTCCGTCATCTCCTTCTTCCGAACCCACGGTTTCTCCGCCGCGCAGATCTACCACGTTTTCAATAAAGTCCCCGATGTCATGCTATACCACCCCACCCGAAGGATTCTCCCCAAATTTCACTTCTTAGCCTCCAAAGGCGCTTCTCCCTCCGACACCGTTCTCATAGTCTCTAAGAATCCCCGTTTCCTCCATCACAACTTCAACAACCGCATCTCTTCTACCTTCCAACTGCTCCGAACGTTCTTTCCCTCCGACCACGAAGCCCTCGCTGTTCTCATTGCCTGTCCCAATATCATCACCGACTATCGCATCGCGTCCAACGTTGACATGTTGCTCGAAGCTGGAGTCACGCACTCCGGCATTCGGCACTTGCTCCACTCTCGGCCTTTGGTTCTCTGCTCCAACCTGAGAACAACCTTGGAGGAAGTGAAGCTGTTGGGTTGTGACCCTTTGAAGCTGAATTTCGTTGTGGCCCTCGAGGCCAAATGGGCTCTTCCAAAATCCCTTTGGGATGCCAAAGTCGACGCCTTGAAGAAATGGGGTTGGTCTGAGGATGAGGTTCTGGTTGCGTTTAGGATCCAACCTTCAATGATGCTGCACTCCTCGGAGAAACTTAATGCAGTGACGGGGATTTGGGTTGGTCGGCTTGGATGGGATCGCTCCGTGCTTATTGCGTACCCATCGTTGTTTTTCTGCAGTTTGGAGAAAAGGATTGTTCCGAGGGCTTTGGTTTTGGAGCATCTTCTCTCCAAAGGATTAGTGAGGAAGGATATTAACTTGTACACACCGTTTAGAATGACTGATGAGGTGTTTCTGCAGAAGTATGTGAAACGTTTCGAGCAGGAAACGCTCAGGTTACTAGAGCTATATCGGGAGGGAGACGGAACATGCCAGCATCTGCGTGTTTAG 1128 0.5009 MNTIIRHRLRLIPTPLLYSFPKSPFLQSSFSFSTTTSDPVSFTLSYLTNTCGFSPEDALKLSKRLRFNTALGFSVISFFRTHGFSAAQIYHVFNKVPDVMLYHPTRRILPKFHFLASKGASPSDTVLIVSKNPRFLHHNFNNRISSTFQLLRTFFPSDHEALAVLIACPNIITDYRIASNVDMLLEAGVTHSGIRHLLHSRPLVLCSNLRTTLEEVKLLGCDPLKLNFVVALEAKWALPKSLWDAKVDALKKWGWSEDEVLVAFRIQPSMMLHSSEKLNAVTGIWVGRLGWDRSVLIAYPSLFFCSLEKRIVPRALVLEHLLSKGLVRKDINLYTPFRMTDEVFLQKYVKRFEQETLRLLELYREGDGTCQHLRV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01459 375 Gene3D Transcription termination factor 3, mitochondrial 173 356 IPR038538 -
Viun5g01459 375 FunFam Mitochondrial transcription termination factor-like 140 356 - -
Viun5g01459 375 PANTHER CGI-12 PROTEIN-RELATED 41 351 IPR003690 GO:0003690|GO:0006355
Viun5g01459 375 SMART mt_12 195 235 IPR003690 GO:0003690|GO:0006355
Viun5g01459 375 SMART mt_12 293 327 IPR003690 GO:0003690|GO:0006355
Viun5g01459 375 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Viun5g01459 375 SMART mt_12 162 190 IPR003690 GO:0003690|GO:0006355
Viun5g01459 375 SMART mt_12 126 156 IPR003690 GO:0003690|GO:0006355
Viun5g01459 375 Pfam mTERF 76 214 IPR003690 GO:0003690|GO:0006355
Viun5g01459 375 Pfam mTERF 245 345 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01459 Viun-Chr5 11573722 11576368 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun5g01459 mTERF 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01459 K15032 - gmx:102666739 290.812