Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01452 ATGGCCACCTTGCAGATGTCCAATGTTGATTTGGAGCAAGGAAACCATTGCCGTTCGCTTGTCGGAAGTGATGTGAGCGTTGAAGGGAGCTTGTGCTTCTCTGATGCTGATGATGGTTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGCGTTTCTGACCCTGAGGCTGGGGGTGTTACTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAAATGGAGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGTGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGTAATAGGACCTGTGAAATTTGTCACTCTATTGCTCGGAATGTTTATGGAGCAAACGAGGATTCGACAGAGCATGTTATCGATGGTAACAATGGTACTACAGCAACAGCCACATCGTCCACACCTGCTCCTTCTACAGAACCTCGAAGATTTTGGCATGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGTATGGTTTTTGCGTTTGTCATATCATGGCTTTTCCACTTCAACGTGCCATCATCGTAG 693 0.4632 MATLQMSNVDLEQGNHCRSLVGSDVSVEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEAGGVTHSGRASSVSECSVELETRNGVPEIKVHLAKVEKDCRICHMGLVSDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSIARNVYGANEDSTEHVIDGNNGTTATATSSTPAPSTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01452 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Viun5g01452 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Viun5g01452 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Viun5g01452 230 MobiDBLite consensus disorder prediction 175 195 - -
Viun5g01452 230 MobiDBLite consensus disorder prediction 175 194 - -
Viun5g01452 230 SUPERFAMILY RING/U-box 102 159 - -
Viun5g01452 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
Viun5g01452 230 PANTHER ZINC FINGER, RING-CH-TYPE 23 229 - -
Viun5g01452 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01452 Viun-Chr5 11459003 11462427 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01452 63 230 C3H Transcription Factor Family AT5G05830 58.929 1.65e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01452 - - gmx:100808666 411.379