Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01450 ATGGCCACCTTGCAGATGTCCAATGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGCTTGTTGGAAGTGATGTGAGCGTTGAAGGGAGCTTGTGCTTCTCTGATGCCGATGATGGTTCTTGCTACTCTCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGCGTTTCTGATCCTGAGGCTGGGGGTGTTGCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGTTGGAAACTAGAACTGGGGTTCCTGAGATCAAGGTGCATTTGGCTAAAGTGGAGATGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGCCATGAATCTGGTGTACCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATTTGTCATGCTGTTGCTCGGAATGTTTATGGAGGAAACGAGGATTCGACAGAGCATGTTAGCGACGGTAGCAATGGTACTACAGCAGCAGCCACACTCTCCACTACTGCTCCTTCTACAGAACCTCGAAGATTTTGGCATGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGTATGGTTTTCGCATTTGTCATATCATGGCTATTCCACTTCAATATGCCATCATCGTAG 693 0.4646 MATLQMSNVDLEQGNHRRSLVGSDVSVEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEAGGVAHSGRASSVSECSVELETRTGVPEIKVHLAKVEMDCRICHMGLESDSHESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHAVARNVYGGNEDSTEHVSDGSNGTTAAATLSTTAPSTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNMPSS 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01450 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Viun5g01450 230 SUPERFAMILY RING/U-box 102 160 - -
Viun5g01450 230 PANTHER ZINC FINGER, RING-CH-TYPE 24 229 - -
Viun5g01450 230 MobiDBLite consensus disorder prediction 169 189 - -
Viun5g01450 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
Viun5g01450 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Viun5g01450 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
Viun5g01450 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01450 Viun-Chr5 11419163 11422584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01450 69 230 C3H Transcription Factor Family AT5G05830 61.350 1.59e-67 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01450 - - gmx:100808666 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01450 5 11419163 11422584 Viun5g01450 5 11419163 11422584 ECH
Viun5g01450 5 11419163 11422584 Viun8g02271 8 32781304 32783909 ECH