Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01408 ATGCTTCAGATTCGGCTTAGCAGGGCTCCTGCATCAGAGGGGTCAGCAGGGGTGAAACAGTCACCTGTTGAGAATGTTACAGTTGCGTGCCCTGATCATCTGGTTCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTGCAGCCACGGCTACTTCTCTTGTGAAAACTTTGGGCCGTAGGTCCCGTCGCCAGCTTGGCGAGCGAGTCCATTTCTGTGTTCGCTGTGATTTCCCTGTAGCCATTTATGGACGCCTGAGCCCTTGTGAGCACGCCTTTTGTCTGGATTGTTCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTGATTTGTGCTGCCCCTCATTGTCTCAAATCTTTCTTAAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCATGCCAACCTTCTTCGACCCAATGCTGATAAAGAAGATGGAAACGACTCAGAAGCACAGAGTGTTAGGCAATCTACAGCTTCAGATTCCACTGCTAGAGGTCCCCAAAGAACAGTTTTTTCTCCTGGTTCGAATTCCCAGCAACATGATCTGGAAGATAAATCTCGTAGACAGACACCAAGAGAGCAACCACCTTCAAGGCAAACCCTGCAGCCAAAGCCACCATATTACGGTCAACAACACCCTTCAGATACCATGTCTGGCTCTGTTGGAGGCGGACAACAGGGTTTTCATCAACAAAGTTTTGACATGCAGCAACCCCCACAAGAACCTTCCCAGTTTTCTGACAGGCAGCAAGCAGTGGGTCCAGAGACCCCATTTCCTGAGTATGCAACGATGCACCCTGCACAACCTTCCAATGTTCCCTCCCTGGTTACTTCAAACCCAATGTTGAACCCTCCTCTGCCATTTGGTTACCCCCCTTACCCAAATGAACGAGCTCAACCCTTTTATGGTGGTCCCTATGATATGCCTAGGCCGGACTCAGGTGCTGATATTGGTGGGGAGCAGAGTTCATTATTGGGATTCCCACAAGGTGCCCCAAATGGCCCAAATTTTCCAGGAAATTATCCCCAGCCCTGGAACTCAGGAATTGGTGGTGTGCCTTTTGAACAAACACAGGGAGGTATGGTTGTGGATCCAAGGGAGGGCAAAGGTATATTGGCACCGCAGCCCATGCCCCTGCCACCACCACCTCCGCCTCCACCCAACATGTCACATTTGAAACAGAACTACTATTCTGGGGAGCTTGGGCATGATGGTCAGGGTTATGGGTGGCAGCATGATAACCGTGATGGCTTTGGTAGCCAGGGCTAG 1317 0.4951 MLQIRLSRAPASEGSAGVKQSPVENVTVACPDHLVLADLPVAKGIGAATATSLVKTLGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCSRSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNDSEAQSVRQSTASDSTARGPQRTVFSPGSNSQQHDLEDKSRRQTPREQPPSRQTLQPKPPYYGQQHPSDTMSGSVGGGQQGFHQQSFDMQQPPQEPSQFSDRQQAVGPETPFPEYATMHPAQPSNVPSLVTSNPMLNPPLPFGYPPYPNERAQPFYGGPYDMPRPDSGADIGGEQSSLLGFPQGAPNGPNFPGNYPQPWNSGIGGVPFEQTQGGMVVDPREGKGILAPQPMPLPPPPPPPPNMSHLKQNYYSGELGHDGQGYGWQHDNRDGFGSQG 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01408 438 MobiDBLite consensus disorder prediction 152 294 - -
Viun5g01408 438 CDD RING-HC_HAKAI-like 70 119 IPR040380 -
Viun5g01408 438 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Viun5g01408 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Viun5g01408 438 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 428 IPR040383 GO:0016567|GO:0061630
Viun5g01408 438 MobiDBLite consensus disorder prediction 209 267 - -
Viun5g01408 438 FunFam E3 ubiquitin-protein ligase Hakai 69 123 - -
Viun5g01408 438 MobiDBLite consensus disorder prediction 390 406 - -
Viun5g01408 438 MobiDBLite consensus disorder prediction 166 195 - -
Viun5g01408 438 MobiDBLite consensus disorder prediction 377 438 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g01408 1 437 C2H2 Transcription Factor Family AT5G01160 45.575 2.29e-112 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01408 K15685 - gmx:100817582 796.964