Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g01382 ATGAATAGGGCAATTGAAGTACTGTCTCCAGCCTCCTATCTCCAAAATTCCAACTGGTTGTTCCAGGAAAGCAAGGGAGGAGGATGGACTGCGGAAGAGAACAAGCTGTTCGAGAATGCTTTGGCTTACTATGATAAGGACACCCCTGATAGATGGATGAGGGTGGCAGCCATGATTCCTGGGAAAACTGTTGGTGATGTGATCCAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATTCCAGTTCCTGGCTATACTACCAGTTCTTTCACATTGGAGTGGGTTAACAGTCAAAGCTATGACGAGTTCAAGCACTTTTGTGCTGTTGGTGAGAAAAGGGGTGCATCCACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGCTTGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATTTCAAGGAACTTTGTGACCACAAGGACACCTACCCAGGTTGCAAGTCATGCTCAGAAGTACTTCATCAGGCAGCTTACAGGGGGGAAGGACAAGAGGAGATCAAGTATCCATGACATCACAATGGTGAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAGGCCTTCTTCACCTTTACAGAATCAGAAATTGTCTAGCATGGTGAAGCAGGAATATGATTGGAAAACGCCATGTGATGACATGCCTTTTGTTTTCAACTCAACAAATGGAAACATGTTCATGGCAGCACCACTGCATGGGATTTCCTCGTATGAATCTAGACCACAGGAGCATAATCTACTTAGACAATCTCCATGGATGCCAGTTTTCACCTTGTGA 861 0.4518 MNRAIEVLSPASYLQNSNWLFQESKGGGWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIQQYRELEEDVSVIEAGLIPVPGYTTSSFTLEWVNSQSYDEFKHFCAVGEKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTRPSSPLQNQKLSSMVKQEYDWKTPCDDMPFVFNSTNGNMFMAAPLHGISSYESRPQEHNLLRQSPWMPVFTL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g01382 286 Gene3D - 21 88 - -
Viun5g01382 286 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Viun5g01382 286 Gene3D - 134 184 - -
Viun5g01382 286 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Viun5g01382 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Viun5g01382 286 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 250 IPR043363 -
Viun5g01382 286 FunFam transcription factor MYB1R1 134 185 - -
Viun5g01382 286 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Viun5g01382 286 CDD SANT 135 180 IPR001005 -
Viun5g01382 286 MobiDBLite consensus disorder prediction 204 225 - -
Viun5g01382 286 FunFam Transcription factor SRM1 21 88 - -
Viun5g01382 286 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Viun5g01382 286 SMART sant 25 77 IPR001005 -
Viun5g01382 286 SMART sant 132 182 IPR001005 -
Viun5g01382 286 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Viun5g01382 286 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Viun5g01382 286 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Viun5g01382 286 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g01382 Viun-Chr5 10560122 10562808 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun5g01382 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g01382 - - var:108329798 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g01382 5 10560122 10562808 Viun5g01382 5 10560122 10562808 ECH
Viun5g01382 5 10560122 10562808 Viun1g03169 1 39742626 39744404 ECH
Viun5g01382 5 10560122 10562808 Viun8g02286 8 32876299 32878321 ECH
Viun1g03169 1 39742626 39744404 Viun5g01382 5 10560122 10562808 ECH